TCONS_00036423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036423
Unique NameTCONS_00036423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length822

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036423 ID=TCONS_00036423|Name=TCONS_00036423|organism=Clytia hemisphaerica|type=transcript|length=822bp
NNATTTCCAATTAGAGATCACTACATATTTAATCTTTTTATAAACTTGAC
TTGTAGATACCACTaagattttctgtaaaatataTGCCTTCGGTCTGTAA
CATAAACTTCTTGAAATCTGGGTCTggtgtaatatcaaaatataatgATA
TGAATCATTAATAATCAATTCTGAAAAGGTGACTTTCGCTTCAGGGGAGA
AGGGAGAGTTAGATTCATGACAAGTTCTCAACTTTTCAAACCTCTACTTG
TACAGAAAATTGCAGattgaattgttttgtttttttttccgaTCCGACTG
GGGGCACATAATTAAAACCGTATGTGGTAGATCAAATTTTTAGACCATTA
GAATTTTCAGCTATGACGCTGAAGCTTGTCTCACGCCCGCTACGTTTGCT
TAGCAtagttagattttttttctcgattattatttttatcatcattatta
tCGACTAATTTCCCCCATTTGTGATTACGAAATGAATGTCCTACAATCTA
TCAAATACCTTGAGGGTCCCCTCGCGGGATAAGACTTGTCAACAACAATA
AATCTGATCTGCTCCCGCCCTAAATTTTTTCTAATAAGTATtaatttgtt
tgttattttattttgataatttagtTCAATGTTTGAAGTTTGCACAGTAC
CGAGTATAATTTGAAATGTATTTTTCGAGTTTAGATTTTCGCCATAATAT
ACCTGATGGCTCAGAAAATATAGGAAACTCTCTGAACGATAAAAATAGAT
CCAATATTGTACGAGTAAAATTACAACTTTTTTATCGTCATCTTGAAAAA
CATCGATAAACTTTTCTCTCTC
Run BLAST on NCBI

transcript from alignment at sc0001458:36112..36933

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036423 ID=TCONS_00036423|Name=TCONS_00036423|organism=Clytia hemisphaerica|type=transcript|length=822bp|location=Sequence derived from alignment at sc0001458:36112..36933 (Clytia hemisphaerica)
GAGAGAGAAAAGTTTATCGATGTTTTTCAAGATGACGATAAAAAAGTTGT
AATTTTACTCGTACAATATTGGATCTATTTTTATCGTTCAGAGAGTTTCC
TATATTTTCTGAGCCATCAGGTATATTATGGCGAAAATCTAAACTCGAAA
AATACATTTCAAATTATACTCGGTACTGTGCAAACTTCAAACATTGAact
aaattatcaaaataaaataacaaacaaattaATACTTATTAGAAAAAATT
TAGGGCGGGAGCAGATCAGATTTATTGTTGTTGACAAGTCTTATCCCGCG
AGGGGACCCTCAAGGTATTTGATAGATTGTAGGACATTCATTTCGTAATC
ACAAATGGGGGAAATTAGTCGataataatgatgataaaaataataatcga
gaaaaaaaatctaactaTGCTAAGCAAACGTAGCGGGCGTGAGACAAGCT
TCAGCGTCATAGCTGAAAATTCTAATGGTCTAAAAATTTGATCTACCACA
TACGGTTTTAATTATGTGCCCCCAGTCGGAtcggaaaaaaaaacaaaaca
attcaatCTGCAATTTTCTGTACAAGTAGAGGTTTGAAAAGTTGAGAACT
TGTCATGAATCTAACTCTCCCTTCTCCCCTGAAGCGAAAGTCACCTTTTC
AGAATTGATTATTAATGATTCATATcattatattttgatattacaccAGA
CCCAGATTTCAAGAAGTTTATGTTACAGACCGAAGGCAtatattttacag
aaaatcttAGTGGTATCTACAAGTCAAGTTTATAAAAAGATTAAATATGT
AGTGATCTCTAATTGGAAATNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021464XLOC_021464Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036423-exon-sc0001458-1491911889:36112..36933TCONS_00036423-exon-sc0001458-1491911889:36112..36933Clytia hemisphaericaexon
TCONS_00036423-exon-sc0001458-1510915933:36112..36933TCONS_00036423-exon-sc0001458-1510915933:36112..36933Clytia hemisphaericaexon
TCONS_00036423-exon-sc0001458-1575043694:36112..36933TCONS_00036423-exon-sc0001458-1575043694:36112..36933Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001458supercontigsc0001458:36112..36933 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0575754	0.00949999	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2.42435	0.810152	0	0	4.79704	4.2933	0.667005	0.432122	0.0775213	0.14654	0.805016	1.00359	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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