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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036422 ID=TCONS_00036422|Name=TCONS_00036422|organism=Clytia hemisphaerica|type=transcript|length=993bp
GAAGAGGTTTACTCAacatcacagacctctacaaaaaccAAATCATTCAA
TACAGTAAATACCTTAAAAACTCCACCGAACATCTCATGATATTAGTATC
AACGTCACAAACCGACAGAGGAGCAAAATCCCTCCACCAAAAAGCCGAGA
AGTACCTAGCAGAACTCAACATTGACTAAAACCAAGCAAACGAACTTACA
AAACCACAATTGAAATTGCGAGTCAAAACCAAAcgctccaaacaaaaaaa
tcaaaatcctcAAAGAAAAACCCATGCACGGCCAATTCTTCATCACACTA
GACCAACCCCACATCGACAAAGACGCTTCATTGTCATGGCTAAGATCCTT
CACATTGAAAAGAACTACCGAATCAACCATCTGCGCAATCCAAGAAAATG
CAATAACCACCAAATACACCCAAAAACATATCTTCAAAACCACCAATGAC
GACACCTGTAGAGCCTGTAAGACCAAACCCGAAACCATCCACCATGTCAT
CTCAGGATGCCCAGTCCTTGCACCAACCAAATATGCCCAACGCCATGACA
ATGTGTGCCGATACATACACCTCCTCCTTGCAGAGAAACATGCCATGATC
CAACCTAACTCTTCCAAATGGTACCAATATGACCCTGAACCGCTACTCGA
AAATGACGATGTAAAGATCCTATGGAACTTTCCTGTCCAAATGGACAGAA
GAGTCGCGCACAATAAACCCGATATCATCGTCATCAACAAATNTTTTTAG
CAACAGTTTGCGTCCTCTATAATGGCGCGTCACAAACTTTCTAAATTCTT
TTACACGATTTGTTTGAACTTTCCTAAAGATTCGTCTCGACTTCGACATT
GCATCCCACCCCACTCCACCGACATGATGTAATTGTCGGCTCAAAGTATG
AAATAAAAACTCAAAAGTACAACTTTTTAACTCCCTGCCTAATTATCAAC
ATAGTCCATAGGTAAACGGACTATGTTATCAGGGAATAAAAAT Run BLAST on NCBI protein sequence of TCONS_00036422-protein >TCONS_00036422-protein ID=TCONS_00036422-protein|Name=TCONS_00036422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MHGQFFITLDQPHIDKDASLSWLRSFTLKRTTESTICAIQENAITTKYTQ
KHIFKTTNDDTCRACKTKPETIHHVISGCPVLAPTKYAQRHDNVCRYIHL
LLAEKHAMIQPNSSKWYQYDPEPLLENDDVKILWNFPVQMDRRVAHNKPD
IIVINKXF Run BLAST on NCBI transcript from alignment at sc0001458:29699..30691 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036422 ID=TCONS_00036422|Name=TCONS_00036422|organism=Clytia hemisphaerica|type=transcript|length=993bp|location=Sequence derived from alignment at sc0001458:29699..30691 (Clytia hemisphaerica)
ATTTTTATTCCCTGATAACATAGTCCGTTTACCTATGGACTATGTTGATA
ATTAGGCAGGGAGTTAAAAAGTTGTACTTTTGAGTTTTTATTTCATACTT
TGAGCCGACAATTACATCATGTCGGTGGAGTGGGGTGGGATGCAATGTCG
AAGTCGAGACGAATCTTTAGGAAAGTTCAAACAAATCGTGTAAAAGAATT
TAGAAAGTTTGTGACGCGCCATTATAGAGGACGCAAACTGTTGCTAAAAA
NATTTGTTGATGACGATGATATCGGGTTTATTGTGCGCGACTCTTCTGTC
CATTTGGACAGGAAAGTTCCATAGGATCTTTACATCGTCATTTTCGAGTA
GCGGTTCAGGGTCATATTGGTACCATTTGGAAGAGTTAGGTTGGATCATG
GCATGTTTCTCTGCAAGGAGGAGGTGTATGTATCGGCACACATTGTCATG
GCGTTGGGCATATTTGGTTGGTGCAAGGACTGGGCATCCTGAGATGACAT
GGTGGATGGTTTCGGGTTTGGTCTTACAGGCTCTACAGGTGTCGTCATTG
GTGGTTTTGAAGATATGTTTTTGGGTGTATTTGGTGGTTATTGCATTTTC
TTGGATTGCGCAGATGGTTGATTCGGTAGTTCTTTTCAATGTGAAGGATC
TTAGCCATGACAATGAAGCGTCTTTGTCGATGTGGGGTTGGTCTAGTGTG
ATGAAGAATTGGCCGTGCATGGGTTTTTCTTTgaggattttgattttttt
gtttggagcgTTTGGTTTTGACTCGCAATTTCAATTGTGGTTTTGTAAGT
TCGTTTGCTTGGTTTTAGTCAATGTTGAGTTCTGCTAGGTACTTCTCGGC
TTTTTGGTGGAGGGATTTTGCTCCTCTGTCGGTTTGTGACGTTGATACTA
ATATCATGAGATGTTCGGTGGAGTTTTTAAGGTATTTACTGTATTGAATG
ATTTggtttttgtagaggtctgtgatgtTGAGTAAACCTCTTC Coding sequence (CDS) from alignment at sc0001458:29699..30691 >TCONS_00036422 ID=TCONS_00036422|Name=TCONS_00036422|organism=Clytia hemisphaerica|type=CDS|length=477bp|location=Sequence derived from alignment at sc0001458:29699..30691 (Clytia hemisphaerica)
CTAAAAANATTTGTTGATGACGATGATATCGGGTTTATTGTGCGCGACTC
TTCTGTCCATTTGGACAGGAAAGTTCCATAGGATCTTTACATCGTCATTT
TCGAGTAGCGGTTCAGGGTCATATTGGTACCATTTGGAAGAGTTAGGTTG
GATCATGGCATGTTTCTCTGCAAGGAGGAGGTGTATGTATCGGCACACAT
TGTCATGGCGTTGGGCATATTTGGTTGGTGCAAGGACTGGGCATCCTGAG
ATGACATGGTGGATGGTTTCGGGTTTGGTCTTACAGGCTCTACAGGTGTC
GTCATTGGTGGTTTTGAAGATATGTTTTTGGGTGTATTTGGTGGTTATTG
CATTTTCTTGGATTGCGCAGATGGTTGATTCGGTAGTTCTTTTCAATGTG
AAGGATCTTAGCCATGACAATGAAGCGTCTTTGTCGATGTGGGGTTGGTC
TAGTGTGATGAAGAATTGGCCGTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036422-exon-sc0001458-1491911889:29699..30691 | TCONS_00036422-exon-sc0001458-1491911889:29699..30691 | Clytia hemisphaerica | exon |
| TCONS_00036422-exon-sc0001458-1510915933:29699..30691 | TCONS_00036422-exon-sc0001458-1510915933:29699..30691 | Clytia hemisphaerica | exon |
| TCONS_00036422-exon-sc0001458-1575043694:29699..30691 | TCONS_00036422-exon-sc0001458-1575043694:29699..30691 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001458 | supercontig | sc0001458:29699..30691 . |
Blast
The following BLAST results are available for this feature:
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