TCONS_00036420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036420
Unique NameTCONS_00036420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length700

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036420 ID=TCONS_00036420|Name=TCONS_00036420|organism=Clytia hemisphaerica|type=transcript|length=700bp
tttcaatCCAATGTCCCTTATGTACAGAGACGAGATGGACAGATTTTGTT
TGAGTCAACCAACCTCTGCAGGCACCAATGCAGCGACCAACGAAAATGTC
GACGATGAAGACGAAGCAAACAATGACGACAACACAGCATTGGTTCAAGC
ACTCGACCATGCAATCATTCAAGCTGACCGTAACGAAGGAATTCTTTACG
AGGACCTCCTGTGGGAAACAGAGCTGTTCGACAACGTAAGCGAGGTCTGT
GACACGGATTACATCGAAAAAGTTATCACCCTCGCAGCTAACGTGCATGA
TGTTTGGGATTCTTTGCGAATGACAGAAAATGCGAAGAATATGTTTAGAC
GAAGGCTACGAAGCAATTGGGAAGGACCCGATACCGTATATGACGCTTGG
TTGGTGCGAAAGGGGTATGAGCGCTCTTGGTTTGATTATCCTTTACTTTA
CAGCAAGTATCCTGACTTTGACCCTGAAGCAGAACAAGAGCCACCAACTT
AAAAGCCTTTAACTCAACAAGAGGCACGTGCATCTTCGGCAAGTGAGGAA
TCATTTAGCGAAATCACCTCGTACCAACCACCTAGACCGGAGCTTGTGCC
TGAAGCCAAAACTCCAACCCGAACGCCACCGTCTTCGCCTAAATTGGTCA
TACCGGAGATTCCTGTCATTCCAAAGCCTTCCACAGACAGCGAAAGTTCA
Run BLAST on NCBI

protein sequence of TCONS_00036420-protein

>TCONS_00036420-protein ID=TCONS_00036420-protein|Name=TCONS_00036420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
FNPMSLMYRDEMDRFCLSQPTSAGTNAATNENVDDEDEANNDDNTALVQA
LDHAIIQADRNEGILYEDLLWETELFDNVSEVCDTDYIEKVITLAANVHD
VWDSLRMTENAKNMFRRRLRSNWEGPDTVYDAWLVRKGYERSWFDYPLLY
SKYPDFDPEAEQEPPT
Run BLAST on NCBI

transcript from alignment at sc0001458:23225..23924

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036420 ID=TCONS_00036420|Name=TCONS_00036420|organism=Clytia hemisphaerica|type=transcript|length=700bp|location=Sequence derived from alignment at sc0001458:23225..23924 (Clytia hemisphaerica)
TGAACTTTCGCTGTCTGTGGAAGGCTTTGGAATGACAGGAATCTCCGGTA
TGACCAATTTAGGCGAAGACGGTGGCGTTCGGGTTGGAGTTTTGGCTTCA
GGCACAAGCTCCGGTCTAGGTGGTTGGTACGAGGTGATTTCGCTAAATGA
TTCCTCACTTGCCGAAGATGCACGTGCCTCTTGTTGAGTTAAAGGCTTTT
AAGTTGGTGGCTCTTGTTCTGCTTCAGGGTCAAAGTCAGGATACTTGCTG
TAAAGTAAAGGATAATCAAACCAAGAGCGCTCATACCCCTTTCGCACCAA
CCAAGCGTCATATACGGTATCGGGTCCTTCCCAATTGCTTCGTAGCCTTC
GTCTAAACATATTCTTCGCATTTTCTGTCATTCGCAAAGAATCCCAAACA
TCATGCACGTTAGCTGCGAGGGTGATAACTTTTTCGATGTAATCCGTGTC
ACAGACCTCGCTTACGTTGTCGAACAGCTCTGTTTCCCACAGGAGGTCCT
CGTAAAGAATTCCTTCGTTACGGTCAGCTTGAATGATTGCATGGTCGAGT
GCTTGAACCAATGCTGTGTTGTCGTCATTGTTTGCTTCGTCTTCATCGTC
GACATTTTCGTTGGTCGCTGCATTGGTGCCTGCAGAGGTTGGTTGACTCA
AACAAAATCTGTCCATCTCGTCTCTGTACATAAGGGACATTGGattgaaa

Coding sequence (CDS) from alignment at sc0001458:23225..23924

>TCONS_00036420 ID=TCONS_00036420|Name=TCONS_00036420|organism=Clytia hemisphaerica|type=CDS|length=501bp|location=Sequence derived from alignment at sc0001458:23225..23924 (Clytia hemisphaerica)
TTAAGTTGGTGGCTCTTGTTCTGCTTCAGGGTCAAAGTCAGGATACTTGC
TGTAAAGTAAAGGATAATCAAACCAAGAGCGCTCATACCCCTTTCGCACC
AACCAAGCGTCATATACGGTATCGGGTCCTTCCCAATTGCTTCGTAGCCT
TCGTCTAAACATATTCTTCGCATTTTCTGTCATTCGCAAAGAATCCCAAA
CATCATGCACGTTAGCTGCGAGGGTGATAACTTTTTCGATGTAATCCGTG
TCACAGACCTCGCTTACGTTGTCGAACAGCTCTGTTTCCCACAGGAGGTC
CTCGTAAAGAATTCCTTCGTTACGGTCAGCTTGAATGATTGCATGGTCGA
GTGCTTGAACCAATGCTGTGTTGTCGTCATTGTTTGCTTCGTCTTCATCG
TCGACATTTTCGTTGGTCGCTGCATTGGTGCCTGCAGAGGTTGGTTGACT
CAAACAAAATCTGTCCATCTCGTCTCTGTACATAAGGGACATTGGattga
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021461XLOC_021461Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036420-proteinTCONS_00036420-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036420-exon-sc0001458-1491911889:23225..23924TCONS_00036420-exon-sc0001458-1491911889:23225..23924Clytia hemisphaericaexon
TCONS_00036420-exon-sc0001458-1510915933:23225..23924TCONS_00036420-exon-sc0001458-1510915933:23225..23924Clytia hemisphaericaexon
TCONS_00036420-exon-sc0001458-1575043694:23225..23924TCONS_00036420-exon-sc0001458-1575043694:23225..23924Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001458supercontigsc0001458:23225..23924 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.343424	0.252357	0.163624	0	0.0974414	0	0.185793	0.282039	0.153786	0.893146	0.566089	1.12178	0.50886	0.526483	0.635281	0.561289	0.731924	0.608016	0.624282	0.376688	3.01235	2.95731	1.36025	1.42241	1.49767	0.76755	3.16141	2.18321	0.691519	1.73176
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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