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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036418 ID=TCONS_00036418|Name=TCONS_00036418|organism=Clytia hemisphaerica|type=transcript|length=720bp
TATTACGCGCTTTTCGATGGCTTCGTCTATAAAAAGGTCCCAGAGGCTAG
ATATACGTTTGTCTTTTGTTCTTCGGTCCACAACTTTATCCACTTCGTCT
TTGGCAACTCGGAAATGGCAGACCAGATTGTGCAGCATGTAACGCAAATA
ATCAACTTGTTGTCTGAGAGTGCTTGTCGAATTATCAAACCTTTACAAAT
TGATTACAACTTCATTGAGGTCACGCCCTATGGCACTTGCTTCAACATCC
GTGAGAAATGCTTTCAGCTTGAACCAGCCGATTTAAAAGGCTCACCACGC
GCGTTTGTCAAGTACTTGTATAATCCAGACAGGACACCACATCCCGAACC
ATTCATCAAAGGCGTGGAAAACTCTTTTGGAAATCCTAGAATTCGAAAAC
GGTTTTACAAAAAGTACTACCAGCTACTAATGCATGGCCAGTTTCCACAT
AAAGAAACCAAATTGTGTTTGGTTGGCCCACCAGATTCAGGGAAGACCAG
TTGGTTCACGCCATTTCAAGGCATCATTCCTGCCCGATACATTGCTGGGG
TGATGAACGACGGCCGTTTCTCTGCTGCCATGATCGAAAGCAATACTCAG
ATCGTCATGATGGACGAGTGGACACCCGATTCGCTTTCTTGCGAAGATGC
CAAACGTGTTTTACAAGgCTGGCTGAGAATGAATTGCATGGAAGTCTTCC
ACTATCTTGCCGACTACTTG Run BLAST on NCBI protein sequence of TCONS_00036418-protein >TCONS_00036418-protein ID=TCONS_00036418-protein|Name=TCONS_00036418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
YYALFDGFVYKKVPEARYTFVFCSSVHNFIHFVFGNSEMADQIVQHVTQI
INLLSESACRIIKPLQIDYNFIEVTPYGTCFNIREKCFQLEPADLKGSPR
AFVKYLYNPDRTPHPEPFIKGVENSFGNPRIRKRFYKKYYQLLMHGQFPH
KETKLCLVGPPDSGKTSWFTPFQGIIPARYIAGVMNDGRFSAAMIESNTQ
IVMMDEWTPDSLSCEDAKRVLQGWLRMNCMEVFHYLADYL Run BLAST on NCBI transcript from alignment at sc0001458:24005..25321- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036418 ID=TCONS_00036418|Name=TCONS_00036418|organism=Clytia hemisphaerica|type=transcript|length=1317bp|location=Sequence derived from alignment at sc0001458:24005..25321- (Clytia hemisphaerica)
TATTACGCGCTTTTCGATGGCTTCGTCTATAAAAAGGTCCCAGAGGCTAG
ATATACGTTTGTCTTTTGTTCTTCGGTCCACAACTTTATCCACTTCGTCT
TTGGCAACTCGGAAATGGCAGACCAGATTGTGCAGCATGTAACGCAAATA
ATCAACTTGTTGTCTGAGAGTGCTTGTCGAATTATCAAACCTTTACAAAT
TGATTACAACTTCATTGAGGTCACGCCCTATGGCACTTGCTTCAACATCC
GTGAGAAATGCTTTCAGCTTGAACCAGCCGATTTAAAAGGTACATAATTA
TCACTGTCTTTTTTAAGATGACACTGTTTAACATTTAAATGGGTTAAAGT
GCTGTTGGAAGACTCGTATAAATTGTGAATAAAATCTATTGTTTCTTCCT
CTTATCAGGCTCACCACGCGCGTTTGTCAAGTACTTGTATAATCCAGACA
GGACACCACATCCCGAACCATTCATCAAAGGCGTGGAAAACTCTTTTGGA
AATCCTAGAATTCGAAAACGGTTTTACAAAAAGTACTACCAGCTACTAAT
GCATGGCCAGTTTCCACATAAAGAAACCAAATTGTGTTTGGTTGGCCCAC
CAGATTCAGGGAAGACCAGTTGGTTCACGCCATTTCAAGGCATCATTCCT
GCCCGATACATTGCTGGGGTGATGAACGACGGCCGTTTCTCTGCTGCCAT
GATCGAAAGCAATACTCAGATCGTCATGATGGACGAGTGGACACCCGATT
CGCTTTCTTGCGAAGATGCCAAACGTGTTTTACAAGGTGAGTAGTGGTTT
TTACACCCATCAATGTACTTGTGGTATTGCTCGAGCGCCTGCTCTTTAGA
AAATTGAGATCAGTTTTATTCACTACTGTCTAATTTGCCTTGCTTACCAT
TCAATTTTGGAACTTTGTGTCTTGCTCACTATCCAAATTCTTTCAATTTA
CTTCTTCACGTGTTCAGGTGGAATGAACTTCCTCCCACAGAAGCACAAGA
ACGGATTGAGGATCAATTACAATTCAGGGTTTTTCATCACTACCAACGAG
TATCCAGATTTTGGTAATCAGACCGATTGCGATGGCATCCGTAAACGATT
GGGAGTATTCCAGACATCATCATTGAAAAGAAGAGACACATCAGTCTCAT
GGGAGGGGAACCATTTGATCTGATTATCTTTTTAGTAATTTCTTCCTAGG
AAACAAATTCAAATTGGCTCCGTGTACACTGCTAACCACTTCCAATTTTT
CTCTTTTTTCTCAGGCTGGCTGAGAATGAATTGCATGGAAGTCTTCCACT
ATCTTGCCGACTACTTG Coding sequence (CDS) from alignment at sc0001458:24005..25321- >TCONS_00036418 ID=TCONS_00036418|Name=TCONS_00036418|organism=Clytia hemisphaerica|type=CDS|length=2160bp|location=Sequence derived from alignment at sc0001458:24005..25321- (Clytia hemisphaerica)
GCTGGCTGAGAATGAATTGCATGGAAGTCTTCCACTATCTTGCCGACTAC
TTGGCTCACCACGCGCGTTTGTCAAGTACTTGTATAATCCAGACAGGACA
CCACATCCCGAACCATTCATCAAAGGCGTGGAAAACTCTTTTGGAAATCC
TAGAATTCGAAAACGGTTTTACAAAAAGTACTACCAGCTACTAATGCATG
GCCAGTTTCCACATAAAGAAACCAAATTGTGTTTGGTTGGCCCACCAGAT
TCAGGGAAGACCAGTTGGTTCACGCCATTTCAAGGCATCATTCCTGCCCG
ATACATTGCTGGGGTGATGAACGACGGCCGTTTCTCTGCTGCCATGATCG
AAAGCAATACTCAGATCGTCATGATGGACGAGTGGACACCCGATTCGCTT
TCTTGCGAAGATGCCAAACGTGTTTTACAAGTATTACGCGCTTTTCGATG
GCTTCGTCTATAAAAAGGTCCCAGAGGCTAGATATACGTTTGTCTTTTGT
TCTTCGGTCCACAACTTTATCCACTTCGTCTTTGGCAACTCGGAAATGGC
AGACCAGATTGTGCAGCATGTAACGCAAATAATCAACTTGTTGTCTGAGA
GTGCTTGTCGAATTATCAAACCTTTACAAATTGATTACAACTTCATTGAG
GTCACGCCCTATGGCACTTGCTTCAACATCCGTGAGAAATGCTTTCAGCT
TGAACCAGCCGATTTAAAAGGCTGGCTGAGAATGAATTGCATGGAAGTCT
TCCACTATCTTGCCGACTACTTGGCTCACCACGCGCGTTTGTCAAGTACT
TGTATAATCCAGACAGGACACCACATCCCGAACCATTCATCAAAGGCGTG
GAAAACTCTTTTGGAAATCCTAGAATTCGAAAACGGTTTTACAAAAAGTA
CTACCAGCTACTAATGCATGGCCAGTTTCCACATAAAGAAACCAAATTGT
GTTTGGTTGGCCCACCAGATTCAGGGAAGACCAGTTGGTTCACGCCATTT
CAAGGCATCATTCCTGCCCGATACATTGCTGGGGTGATGAACGACGGCCG
TTTCTCTGCTGCCATGATCGAAAGCAATACTCAGATCGTCATGATGGACG
AGTGGACACCCGATTCGCTTTCTTGCGAAGATGCCAAACGTGTTTTACAA
GTATTACGCGCTTTTCGATGGCTTCGTCTATAAAAAGGTCCCAGAGGCTA
GATATACGTTTGTCTTTTGTTCTTCGGTCCACAACTTTATCCACTTCGTC
TTTGGCAACTCGGAAATGGCAGACCAGATTGTGCAGCATGTAACGCAAAT
AATCAACTTGTTGTCTGAGAGTGCTTGTCGAATTATCAAACCTTTACAAA
TTGATTACAACTTCATTGAGGTCACGCCCTATGGCACTTGCTTCAACATC
CGTGAGAAATGCTTTCAGCTTGAACCAGCCGATTTAAAAGGCTGGCTGAG
AATGAATTGCATGGAAGTCTTCCACTATCTTGCCGACTACTTGGCTCACC
ACGCGCGTTTGTCAAGTACTTGTATAATCCAGACAGGACACCACATCCCG
AACCATTCATCAAAGGCGTGGAAAACTCTTTTGGAAATCCTAGAATTCGA
AAACGGTTTTACAAAAAGTACTACCAGCTACTAATGCATGGCCAGTTTCC
ACATAAAGAAACCAAATTGTGTTTGGTTGGCCCACCAGATTCAGGGAAGA
CCAGTTGGTTCACGCCATTTCAAGGCATCATTCCTGCCCGATACATTGCT
GGGGTGATGAACGACGGCCGTTTCTCTGCTGCCATGATCGAAAGCAATAC
TCAGATCGTCATGATGGACGAGTGGACACCCGATTCGCTTTCTTGCGAAG
ATGCCAAACGTGTTTTACAAGTATTACGCGCTTTTCGATGGCTTCGTCTA
TAAAAAGGTCCCAGAGGCTAGATATACGTTTGTCTTTTGTTCTTCGGTCC
ACAACTTTATCCACTTCGTCTTTGGCAACTCGGAAATGGCAGACCAGATT
GTGCAGCATGTAACGCAAATAATCAACTTGTTGTCTGAGAGTGCTTGTCG
AATTATCAAACCTTTACAAATTGATTACAACTTCATTGAGGTCACGCCCT
ATGGCACTTGCTTCAACATCCGTGAGAAATGCTTTCAGCTTGAACCAGCC
GATTTAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036418-exon-sc0001458-1575043694:25033..25321 | TCONS_00036418-exon-sc0001458-1575043694:25033..25321 | Clytia hemisphaerica | exon |
| TCONS_00036418-exon-sc0001458-1575043694:24536..24913 | TCONS_00036418-exon-sc0001458-1575043694:24536..24913 | Clytia hemisphaerica | exon |
| TCONS_00036418-exon-sc0001458-1575043694:24005..24057 | TCONS_00036418-exon-sc0001458-1575043694:24005..24057 | Clytia hemisphaerica | exon |
| TCONS_00036418-exon-sc0001458-1510915933:25033..25321 | TCONS_00036418-exon-sc0001458-1510915933:25033..25321 | Clytia hemisphaerica | exon |
| TCONS_00036418-exon-sc0001458-1510915933:24536..24913 | TCONS_00036418-exon-sc0001458-1510915933:24536..24913 | Clytia hemisphaerica | exon |
| TCONS_00036418-exon-sc0001458-1510915933:24005..24057 | TCONS_00036418-exon-sc0001458-1510915933:24005..24057 | Clytia hemisphaerica | exon |
| TCONS_00036418-exon-sc0001458-1491911889:25033..25321 | TCONS_00036418-exon-sc0001458-1491911889:25033..25321 | Clytia hemisphaerica | exon |
| TCONS_00036418-exon-sc0001458-1491911889:24536..24913 | TCONS_00036418-exon-sc0001458-1491911889:24536..24913 | Clytia hemisphaerica | exon |
| TCONS_00036418-exon-sc0001458-1491911889:24005..24057 | TCONS_00036418-exon-sc0001458-1491911889:24005..24057 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001458 | supercontig | sc0001458:24005..25321 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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