TCONS_00036413 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036413
Unique NameTCONS_00036413
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1010

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036413 ID=TCONS_00036413|Name=TCONS_00036413|organism=Clytia hemisphaerica|type=transcript|length=1010bp
CGTGTTTGTACCGGTAAAATTGTGAACCTAACCGTATTCTCGAGATTTCT
GTATACCGCAATTTTCCGtctgaaaatttgagttttcaccGTTTCCGCAA
ACTTACCTGACCGCATTCCGGAAATCCTGCTTGTTTTCAGTTTCAACTTC
TAAAGTTTGAGTAACCACCCTTTTACCGTCAAGTTCTTACCGTATTTAGG
AATACCGCATGCTGCCTGTTCCCATTCCAAACGTTTGAATTTCTCGTTAT
CTGTAACTCCCGTTTCGTATCGTTGTTCCGCATATACCGCATTTACCGCA
TACTTTGAAATCGCAATCTATCACGGGCTGACTTATCAATAGCTTTACGC
GTCTGtatatcaaaaattatcgtatcTAACTATCATATCAAAATGTCTCA
AAACGATAGAGCCAAAGAAATTCAATTGAAAAAGGAAATCTCTCAGACAA
TGCGTAAACGAAACGGTGCTAAACATCGAATCACAAAAATGATTCCTGAA
ATCTTGGGGCTTGTAGACGAAAGGGGGAGTAGAACTGAAATCCGTTTCCT
GCGAACGACTCTTGATGAAACCCTTAAAGGCGCTATCAATCATCATGAAG
CGTTAATGCTTATTTTACCTGAAGGAGATTCTCGATTCGGCGATGAATGG
ATCGATGAACTCGCTCTCAACGTAAATTCTTGTTTCGGAAGAATCGAACG
TTACCTTGATAGCCGTAAGGATGATCCGCCATCATCGTTACTATCTTCCA
AAAAGCGCGAAGATATTCAAAGGTGGCGCGAAAAATCACGTGCCCAGGAG
GGTTCTGGCTCTGGTTCTAATCCGTCAATGAGCGACATGTGCGGTACGTT
CTCTAAACTATACGTAAATGAATCACAATTACTCGGAGAATTACGTTCCT
TACCTGACCCCGCGTCTCAAAATGAGGGTATTGAATCGCCACAATCGCCA
ATAATATCGAGCGCAAGCGAAATTCAATCAGTACAAACGGTTATCAATCA
CACAAATACC
Run BLAST on NCBI

protein sequence of TCONS_00036413-protein

>TCONS_00036413-protein ID=TCONS_00036413-protein|Name=TCONS_00036413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MSQNDRAKEIQLKKEISQTMRKRNGAKHRITKMIPEILGLVDERGSRTEI
RFLRTTLDETLKGAINHHEALMLILPEGDSRFGDEWIDELALNVNSCFGR
IERYLDSRKDDPPSSLLSSKKREDIQRWREKSRAQEGSGSGSNPSMSDMC
GTFSKLYVNESQLLGELRSLPDPASQNEGIESPQSPIISSASEIQSVQTV
INHTNT
Run BLAST on NCBI

transcript from alignment at sc0001455:41333..42342

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036413 ID=TCONS_00036413|Name=TCONS_00036413|organism=Clytia hemisphaerica|type=transcript|length=1010bp|location=Sequence derived from alignment at sc0001455:41333..42342 (Clytia hemisphaerica)
GGTATTTGTGTGATTGATAACCGTTTGTACTGATTGAATTTCGCTTGCGC
TCGATATTATTGGCGATTGTGGCGATTCAATACCCTCATTTTGAGACGCG
GGGTCAGGTAAGGAACGTAATTCTCCGAGTAATTGTGATTCATTTACGTA
TAGTTTAGAGAACGTACCGCACATGTCGCTCATTGACGGATTAGAACCAG
AGCCAGAACCCTCCTGGGCACGTGATTTTTCGCGCCACCTTTGAATATCT
TCGCGCTTTTTGGAAGATAGTAACGATGATGGCGGATCATCCTTACGGCT
ATCAAGGTAACGTTCGATTCTTCCGAAACAAGAATTTACGTTGAGAGCGA
GTTCATCGATCCATTCATCGCCGAATCGAGAATCTCCTTCAGGTAAAATA
AGCATTAACGCTTCATGATGATTGATAGCGCCTTTAAGGGTTTCATCAAG
AGTCGTTCGCAGGAAACGGATTTCAGTTCTACTCCCCCTTTCGTCTACAA
GCCCCAAGATTTCAGGAATCATTTTTGTGATTCGATGTTTAGCACCGTTT
CGTTTACGCATTGTCTGAGAGATTTCCTTTTTCAATTGAATTTCTTTGGC
TCTATCGTTTTGAGACATTTTGATATGATAGTTAgatacgataatttttg
atataCAGACGCGTAAAGCTATTGATAAGTCAGCCCGTGATAGATTGCGA
TTTCAAAGTATGCGGTAAATGCGGTATATGCGGAACAACGATACGAAACG
GGAGTTACAGATAACGAGAAATTCAAACGTTTGGAATGGGAACAGGCAGC
ATGCGGTATTCCTAAATACGGTAAGAACTTGACGGTAAAAGGGTGGTTAC
TCAAACTTTAGAAGTTGAAACTGAAAACAAGCAGGATTTCCGGAATGCGG
TCAGGTAAGTTTGCGGAAACggtgaaaactcaaattttcagaCGGAAAAT
TGCGGTATACAGAAATCTCGAGAATACGGTTAGGTTCACAATTTTACCGG
TACAAACACG

Coding sequence (CDS) from alignment at sc0001455:41333..42342

>TCONS_00036413 ID=TCONS_00036413|Name=TCONS_00036413|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at sc0001455:41333..42342 (Clytia hemisphaerica)
GGTATTTGTGTGATTGATAACCGTTTGTACTGATTGAATTTCGCTTGCGC
TCGATATTATTGGCGATTGTGGCGATTCAATACCCTCATTTTGAGACGCG
GGGTCAGGTAAGGAACGTAATTCTCCGAGTAATTGTGATTCATTTACGTA
TAGTTTAGAGAACGTACCGCACATGTCGCTCATTGACGGATTAGAACCAG
AGCCAGAACCCTCCTGGGCACGTGATTTTTCGCGCCACCTTTGAATATCT
TCGCGCTTTTTGGAAGATAGTAACGATGATGGCGGATCATCCTTACGGCT
ATCAAGGTAACGTTCGATTCTTCCGAAACAAGAATTTACGTTGAGAGCGA
GTTCATCGATCCATTCATCGCCGAATCGAGAATCTCCTTCAGGTAAAATA
AGCATTAACGCTTCATGATGATTGATAGCGCCTTTAAGGGTTTCATCAAG
AGTCGTTCGCAGGAAACGGATTTCAGTTCTACTCCCCCTTTCGTCTACAA
GCCCCAAGATTTCAGGAATCATTTTTGTGATTCGATGTTTAGCACCGTTT
CGTTTACGCATTGTCTGAGAGATTTCCTTTTTCAATTGAATTTCTTTGGC
TCTATCGTTTTGAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021455XLOC_021455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036413-exon-sc0001455-1491911889:41333..42342TCONS_00036413-exon-sc0001455-1491911889:41333..42342Clytia hemisphaericaexon
TCONS_00036413-exon-sc0001455-1510915933:41333..42342TCONS_00036413-exon-sc0001455-1510915933:41333..42342Clytia hemisphaericaexon
TCONS_00036413-exon-sc0001455-1575043694:41333..42342TCONS_00036413-exon-sc0001455-1575043694:41333..42342Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036413-proteinTCONS_00036413-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001455supercontigsc0001455:41333..42342 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.906992	0.753084	0.716791	0.186697	0.05973	0.0943989	0.068447	0	0	0.323621	0	0	0.101746	0.122366	0.0754511	0.107961	0.132999	0.10224	0.282499	0.271597	0.171295	0.0626639	0.152352	0.236923	0	0.042441	0.242931	0.129632	0.147481	0.15026
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036413 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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