TCONS_00036404 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036404
Unique NameTCONS_00036404
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length336

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036404 ID=TCONS_00036404|Name=TCONS_00036404|organism=Clytia hemisphaerica|type=transcript|length=336bp
CCAAGAAAGAAATACAAGTCAACCTCAATTTGCGATTGAAAGTTCTTTGC
CTTCGCTACCAGGTGCAGCCACAGTATCGTCCAAACAAACAgttgaagaa
aattctttccAGCTTTGCTCTCCTGTTTTGGGCAAAGTAACAACCAAGGG
AAAACCAAGGGGAAATACAAGTCTAGTGTCTCCTGTTTACAACAAATCCA
ATATATCACAAATGGTCAGATCGAGTTTTTCGCCCACGNCTCTTTGGCGG
ATATGGGGGTCGTTAACGACCCCCCATTAAATTATTGAGAAAAACAGAGT
TTCTAGGCTATAAAAACCCGTGATTTTTATATGTAC
Run BLAST on NCBI

transcript from alignment at sc0001454:49157..50304-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036404 ID=TCONS_00036404|Name=TCONS_00036404|organism=Clytia hemisphaerica|type=transcript|length=1148bp|location=Sequence derived from alignment at sc0001454:49157..50304- (Clytia hemisphaerica)
CCAAGAAAGAAATACAAGTCAACCTCAATTTGCGATTGAAAGTTCTTTGC
CTTCGCTACCAGGTGCAGCCACAGGTGATTATTTGTGTGAAATTCTTTTT
GCCTTATACCTCCATTGCTTGGTATCAGATTCGGTACCATAAAAAAAACC
GTTAAGTTTGCAACACTAAATTCGATTCTTCTCAAATTGTAAATTTTATT
TGATTTGCCACTTATATCACTTTAGTATCGTCCAAACAAACAGTTGAAGA
AAATTCTTTCCAGCTTTGCTCTCCTGTTTTGGGCAAAGGTAACATTACAC
CTTTTTTTATATATTGTAAAATTATAATTTTTTAAAAATCTTGAATGGAA
ATTTCATCCAACATTATCTAGAGAGGAGATGGGTACTGTACTGGGTCACT
GTACTGTACTGGGTCACTAGAGTTTGAAAATGGTCCCTCTCAAGTATATT
TTAACCTTAAAAATTAGTGAATCTGTGGAGATATTTTGAGATCCTGATAT
ACTTTATCTCTTTTAAAAAGGTTGCTTTTTCGGACTAGTAAATAGGAATT
AAAAGCAAGTTTAAGCTGAAGAGAACACTCCTTAAATTCATTTTTTTTAT
TTTTCGTTTTAGTAACAACCAAGGGAAAACCAAGGGGAAATACAAGTCTA
GTGTCTCCTGTTTACAACAAATGTAAGTTTTATAGTAGATCTTTAAAAGT
TGTANTCATTTTTTTTATTTTTCGTTTTAGTAACAACCAAGGGAAAACCA
AGGGGAAATACAAGTCTAGTGTCTCCTGTTTACAACAAATGTAAGTTTTA
TAGTAGATCTTTAAAAGTTGTAAAGGTTTAAAGTTAACGGGCCAAAGGTA
TACCTTAACGAATTAGTTGTTCTAAAAGTGATGTAATGTAAAAAATGCAT
TGTAGGGGCTCAGATCCTTGAATTACTTCTTAAATTGGAATACCGATCGC
TTCTTTTAGTTTTTTTTGCATAGGTTAAATATCAATAGAAAGAAATTCTT
TTGTTCTAGCCAATATATCACAAATGGTCAGATCGAGTTTTTCGCCCACG
NCTCTTTGGCGGATATGGGGGTCGTTAACGACCCCCCATTAAATTATTGA
GAAAAACAGAGTTTCTAGGCTATAAAAACCCGTGATTTTTATATGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021447XLOC_021447Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036404-exon-sc0001454-1575043694:50231..50304TCONS_00036404-exon-sc0001454-1575043694:50231..50304Clytia hemisphaericaexon
TCONS_00036404-exon-sc0001454-1575043694:50017..50079TCONS_00036404-exon-sc0001454-1575043694:50017..50079Clytia hemisphaericaexon
TCONS_00036404-exon-sc0001454-1575043694:49633..49692TCONS_00036404-exon-sc0001454-1575043694:49633..49692Clytia hemisphaericaexon
TCONS_00036404-exon-sc0001454-1575043694:49157..49295TCONS_00036404-exon-sc0001454-1575043694:49157..49295Clytia hemisphaericaexon
TCONS_00036404-exon-sc0001454-1510915933:50231..50304TCONS_00036404-exon-sc0001454-1510915933:50231..50304Clytia hemisphaericaexon
TCONS_00036404-exon-sc0001454-1510915933:50017..50079TCONS_00036404-exon-sc0001454-1510915933:50017..50079Clytia hemisphaericaexon
TCONS_00036404-exon-sc0001454-1510915933:49633..49692TCONS_00036404-exon-sc0001454-1510915933:49633..49692Clytia hemisphaericaexon
TCONS_00036404-exon-sc0001454-1510915933:49157..49295TCONS_00036404-exon-sc0001454-1510915933:49157..49295Clytia hemisphaericaexon
TCONS_00036404-exon-sc0001454-1491911889:50231..50304TCONS_00036404-exon-sc0001454-1491911889:50231..50304Clytia hemisphaericaexon
TCONS_00036404-exon-sc0001454-1491911889:50017..50079TCONS_00036404-exon-sc0001454-1491911889:50017..50079Clytia hemisphaericaexon
TCONS_00036404-exon-sc0001454-1491911889:49633..49692TCONS_00036404-exon-sc0001454-1491911889:49633..49692Clytia hemisphaericaexon
TCONS_00036404-exon-sc0001454-1491911889:49157..49295TCONS_00036404-exon-sc0001454-1491911889:49157..49295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001454supercontigsc0001454:49157..50304 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.08222	0.636709	0	0	1.02382	0.330436	0.218729	0.168114	0.389906	0	0.94257	0.139615	0.415422	0.289411	0.978773	1.42517	0.838824	1.54151	0.890862	2.29241	0.196159	0	0.160148	0.727988	0	0.133838	0	0	1.38414	0.925876
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036404 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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