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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036400 ID=TCONS_00036400|Name=TCONS_00036400|organism=Clytia hemisphaerica|type=transcript|length=1338bp
CTTTTGTACATCACTTTTGCTGTTAATGGATGACTTATTTTGTCAAACTT
GTTTCCATGGTACAAATGAATTTGATATCTTACTTTGTTATTCATATCAC
AGGTAGTAATAAACAAtcatttaaaatgaaataagtAGAAGAATGAATCA
AAATAACATGGATAAATAGATTATTGTTGAATTTGTCAAAGCAGATATTG
GGTCAACATTCATCCAAAAATTATCATCCAGTATCATCCCCTAAACTCAA
AGCTTTAATACACCTGCTCAATCCTTTCACACGGATGTGTATGCCTTTAT
CCTGGAAGGTAGATGTACAATAAATATTACACATTACAAGTTGGATGATT
TCCAACTCTGAAAGACATCGCTGTTGCAATTAAGAAAAAGATGAAGGACA
ACCCGTTGTGGAAAGAAACAACCATAATATCCTCTTAAGTTTCGAAAAAT
GCTCGTATTACCTCGTTTCATTTCATGTTCCTGATATCACGTGATTATAA
TCCTTGCGTGCTGTTTTGGTTTATTGGAATACTCGATCCAAAACGGAAAA
GTTTTTCGGCGATTATTACCTTGTTTCAGTTTGTTCCTGGTATCTTCTGA
TTTTGATTATATAGTGCTATTGGAGTTTATTGGATTACGGaagctaattt
gaaattataTCGGATGATTTATTTGTTACCAAATTGCATCGTTTTTTATG
CGGACATTAAATTTTgtcgttcaattttgtcaatataaatTCACTACAAT
TATTTATATTATTTGTCATagctcaaagaaaatgcttttgagaataaatt
tttctaatatactacgaacttttcattttaagaGATTAACAAGCGCTGCA
AGATGTTAAACTTTTCAATTCATCAGTCCTTACTACTTTAAGATaatgtt
ttcattcatttaCAAATTAGGCATAAAACTTAATACATACTGACAAGcga
aattgacaaaaaagattTGGGTTGCGCGCCGTGAGAGCATAGGGGAATAT
CGTTTTGTCGTTTGAAGATACTGTGTAAGCAGATTATAGAAATAACGTTA
AAGTGGGGAGTGCACGAGTTGATTTCCGAAAAATGGAGGAATTTTCTCGT
GATTTTCTGAAATTCTGTAaagtacattaaaggaagaaatttttggccaa
aatcgaTATTAAAGAagccaaaaaacctgttttaaggcctgaaatagcac
gaATTAGAGGAATACGTGAAATGAATCAAATTTAgggggaatttaatttg
gcggatggaggaaaaaataaattttggcgggaacttaatttagTGGATTT
AGGTCTATCtcccaaattttctttccgctaaaatttct Run BLAST on NCBI transcript from alignment at sc0001454:117..1875- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036400 ID=TCONS_00036400|Name=TCONS_00036400|organism=Clytia hemisphaerica|type=transcript|length=1759bp|location=Sequence derived from alignment at sc0001454:117..1875- (Clytia hemisphaerica)
CTTTTGTACATCACTTTTGCTGTTAATGGATGACTTATTTTGTCAAACTT
GTTTCCATGGTACAAATGAATTTGATATCTTACTTTGTTATTCATATCAC
AGGTAGTAATAAACAATCATTTAAAATGAAATAAGTAGAAGAATGAATCA
AAATAACATGGATAAATAGATTATTGTTGAATTTGTCAAAGCAGATATTG
GGTCAACATTCATCCAAAAATTATCATCCAGTATCATCCCCTAAACTCAA
AGCTTTAATACACCTGCTCAATCGTAAGTAATAATTTTTCTTTTGTCCTC
TTGAGCAGCTGCATGTTTTCTATTATTACAAATACAAAGATGTTTTTCTG
CTGATTTACAAAATAACATTTTAATAATATCAATCATCAGAAACATCATA
TTAGGGGTCCAAAAAAGTTAACTGTATTATTTGAATATTGGTAAAAAATC
CATATTGAAAAATTTTGGGGTTAGATATAAATATATCAAATATTATGGTT
GTGGAATAGATGTTTTTCGTGCAACTAATTTTATTATAGACACCCAAAAA
TTAAGAAAAATATATCTTGCATATATATCAGTTCAATGAAAATTTGTTCC
CTTGAGGCTCCAGCCATGGAGAAAATGGTCCTGTAAGCTATGTATTTTTT
TCAGAAATCTTCTAATCTTTTGTTTCAATTTTCTTCTATTTAAGCTTTCA
CACGGATGTGTATGCCTTTATCCTGGAAGGTAGATGTACAATAAATATTA
CACATTACAAGTTGGATGATTTCCAACTCTGAAAGACATCGCTGTTGCAA
TTAAGAAAAAGATGAAGGACAACCCGTTGTGGAAAGAAACAACCATAATA
TCCTCTTAAGTTTCGAAAAATGCTCGTATTACCTCGTTTCATTTCATGTT
CCTGATATCACGTGATTATAATCCTTGCGTGCTGTTTTGGTTTATTGGAA
TACTCGATCCAAAACGGAAAAGTTTTTCGGCGATTATTACCTTGTTTCAG
TTTGTTCCTGGTATCTTCTGATTTTGATTATATAGTGCTATTGGAGTTTA
TTGGATTACGGAAGCTAATTTGAAATTATATCGGATGATTTATTTGTTAC
CAAATTGCATCGTTTTTTATGCGGACATTAAATTTTGTCGTTCAATTTTG
TCAATATAAATTCACTACAATTATTTATATTATTTGTCATAGCTCAAAGA
AAATGCTTTTGAGAATAAATTTTTCTAATATACTACGAACTTTTCATTTT
AAGAGATTAACAAGCGCTGCAAGATGTTAAACTTTTCAATTCATCAGTCC
TTACTACTTTAAGATAATGTTTTCATTCATTTACAAATTAGGCATAAAAC
TTAATACATACTGACAAGCGAAATTGACAAAAAAGATTTGGGTTGCGCGC
CGTGAGAGCATAGGGGAATATCGTTTTGTCGTTTGAAGATACTGTGTAAG
CAGATTATAGAAATAACGTTAAAGTGGGGAGTGCACGAGTTGATTTCCGA
AAAATGGAGGAATTTTCTCGTGATTTTCTGAAATTCTGTAAAGTACATTA
AAGGAAGAAATTTTTGGCCAAAATCGATATTAAAGAAGCCAAAAAACCTG
TTTTAAGGCCTGAAATAGCACGAATTAGAGGAATACGTGAAATGAATCAA
ATTTAGGGGGAATTTAATTTGGCGGATGGAGGAAAAAATAAATTTTGGCG
GGAACTTAATTTAGTGGATTTAGGTCTATCTCCCAAATTTTCTTTCCGCT
AAAATTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036400-exon-sc0001454-1575043694:1603..1875 | TCONS_00036400-exon-sc0001454-1575043694:1603..1875 | Clytia hemisphaerica | exon |
| TCONS_00036400-exon-sc0001454-1575043694:117..1181 | TCONS_00036400-exon-sc0001454-1575043694:117..1181 | Clytia hemisphaerica | exon |
| TCONS_00036400-exon-sc0001454-1510915933:1603..1875 | TCONS_00036400-exon-sc0001454-1510915933:1603..1875 | Clytia hemisphaerica | exon |
| TCONS_00036400-exon-sc0001454-1510915933:117..1181 | TCONS_00036400-exon-sc0001454-1510915933:117..1181 | Clytia hemisphaerica | exon |
| TCONS_00036400-exon-sc0001454-1491911889:1603..1875 | TCONS_00036400-exon-sc0001454-1491911889:1603..1875 | Clytia hemisphaerica | exon |
| TCONS_00036400-exon-sc0001454-1491911889:117..1181 | TCONS_00036400-exon-sc0001454-1491911889:117..1181 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001454 | supercontig | sc0001454:117..1875 - |
Blast
The following BLAST results are available for this feature:
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