TCONS_00036397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036397
Unique NameTCONS_00036397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036397 ID=TCONS_00036397|Name=TCONS_00036397|organism=Clytia hemisphaerica|type=transcript|length=1228bp
ctGACCTTCAACATATTTATACACGTGTCTTGACTTTTTTGGATCTTTAT
GAAAACAGAGGGATTTACGGAAGAAATCTTGACAACCAAGTTGATGAATT
GTGTAATGATTTACGTTCTTATAGAACTgatgatcaaaatattttggcaa
CGTTATCAATGCTTGAACAGAACTTAAATCAACtgaaagaaattgttttt
tcacCATCTTCCGATTTGCAGCTGTTTCCAACTGGTCCCACATTAGAACA
AAATCCTGAAGGGGAAAGAGGAAGACCTCGTTATTCGATACATATGGATA
CTTTGATCAGTTTGCGTCAACTTGGAATGAGCTGGAAAAAAATTGGTGAT
GTTTTTACTGTGTCAAGGTGGACTATATATCGCCGAGTATCGGAGTATGG
TATCGCTAACACAAGTAGGTTTACTGATTTGAATGATGATGAGCTGTTGG
AAATCATTGGTAATTACTTGGATAATCAAAGCAGACTGGTTGGGTTTTCA
ATGGTATACGGGCACTTACGGTCTCTAGGCATTCATGTTCAACAAAGAAG
AGTGCGTATATTACTTCAACGCTTTGACCCTGATTTTAGTGCAATGCGCT
GGGCAGCTGTAATTCATAGACGCTCCTACAATGTGAGGGCCCCAAACAGT
TTGTGGCATTTGGATGGCCACCACAGCCTTATCAAATATGGTTTTGTTAT
TCACGGAAGTATTGATGGTTTTTCTAGGATGATAACCTTTTTGAAATGTT
CAACTAATAACACTGCCTTGACAGTGTTGGAGTTATTTTTGGATGCAATT
GAGAATTATGGGACCCCTTCGCGTATAAGAACAGATTTTGGTGGGGAAAA
CATTCGAGTTTGGGAGTTGATGGAAAATCTCATGGGAGTTGGTCGTGGAA
GTGCATTAAGAGGCACTTCTACGCAAAACCAACGTATTGAACGATTATGG
AGGGACGTTTTTAGATGTGTGTCATCGACATATTACTATTTGTTTCAAGC
CATGTCAGACTCTGGAATTCtaaacattgaaattttgttacaTAAAGTTG
TATTGCATTTTGTTTTCTTGCCCAGGATTAACAGATCTTTAAATCTTTTC
ACAGATGCATGGAACAATCACCCTCTACGCACAGAAAGAAGTCGTAGTCC
GGTGCAGATCTGGCAATTAGGTATGGTTGACTTTCGTAATCGTTATCTAA
ATACCACAGTAAATGTATTGAATGATGG
Run BLAST on NCBI

protein sequence of TCONS_00036397-protein

>TCONS_00036397-protein ID=TCONS_00036397-protein|Name=TCONS_00036397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=408bp
DLQHIYTRVLTFLDLYENRGIYGRNLDNQVDELCNDLRSYRTDDQNILAT
LSMLEQNLNQLKEIVFSPSSDLQLFPTGPTLEQNPEGERGRPRYSIHMDT
LISLRQLGMSWKKIGDVFTVSRWTIYRRVSEYGIANTSRFTDLNDDELLE
IIGNYLDNQSRLVGFSMVYGHLRSLGIHVQQRRVRILLQRFDPDFSAMRW
AAVIHRRSYNVRAPNSLWHLDGHHSLIKYGFVIHGSIDGFSRMITFLKCS
TNNTALTVLELFLDAIENYGTPSRIRTDFGGENIRVWELMENLMGVGRGS
ALRGTSTQNQRIERLWRDVFRCVSSTYYYLFQAMSDSGILNIEILLHKVV
LHFVFLPRINRSLNLFTDAWNNHPLRTERSRSPVQIWQLGMVDFRNRYLN
TTVNVLND
Run BLAST on NCBI

transcript from alignment at sc0001453:47730..48957

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036397 ID=TCONS_00036397|Name=TCONS_00036397|organism=Clytia hemisphaerica|type=transcript|length=1228bp|location=Sequence derived from alignment at sc0001453:47730..48957 (Clytia hemisphaerica)
CCATCATTCAATACATTTACTGTGGTATTTAGATAACGATTACGAAAGTC
AACCATACCTAATTGCCAGATCTGCACCGGACTACGACTTCTTTCTGTGC
GTAGAGGGTGATTGTTCCATGCATCTGTGAAAAGATTTAAAGATCTGTTA
ATCCTGGGCAAGAAAACAAAATGCAATACAACTTTAtgtaacaaaatttc
aatgtttaGAATTCCAGAGTCTGACATGGCTTGAAACAAATAGTAATATG
TCGATGACACACATCTAAAAACGTCCCTCCATAATCGTTCAATACGTTGG
TTTTGCGTAGAAGTGCCTCTTAATGCACTTCCACGACCAACTCCCATGAG
ATTTTCCATCAACTCCCAAACTCGAATGTTTTCCCCACCAAAATCTGTTC
TTATACGCGAAGGGGTCCCATAATTCTCAATTGCATCCAAAAATAACTCC
AACACTGTCAAGGCAGTGTTATTAGTTGAACATTTCAAAAAGGTTATCAT
CCTAGAAAAACCATCAATACTTCCGTGAATAACAAAACCATATTTGATAA
GGCTGTGGTGGCCATCCAAATGCCACAAACTGTTTGGGGCCCTCACATTG
TAGGAGCGTCTATGAATTACAGCTGCCCAGCGCATTGCACTAAAATCAGG
GTCAAAGCGTTGAAGTAATATACGCACTCTTCTTTGTTGAACATGAATGC
CTAGAGACCGTAAGTGCCCGTATACCATTGAAAACCCAACCAGTCTGCTT
TGATTATCCAAGTAATTACCAATGATTTCCAACAGCTCATCATCATTCAA
ATCAGTAAACCTACTTGTGTTAGCGATACCATACTCCGATACTCGGCGAT
ATATAGTCCACCTTGACACAGTAAAAACATCACCAATTTTTTTCCAGCTC
ATTCCAAGTTGACGCAAACTGATCAAAGTATCCATATGTATCGAATAACG
AGGTCTTCCTCTTTCCCCTTCAGGATTTTGTTCTAATGTGGGACCAGTTG
GAAACAGCTGCAAATCGGAAGATGgtgaaaaaacaatttctttcaGTTGA
TTTAAGTTCTGTTCAAGCATTGATAACGttgccaaaatattttgatcatc
AGTTCTATAAGAACGTAAATCATTACACAATTCATCAACTTGGTTGTCAA
GATTTCTTCCGTAAATCCCTCTGTTTTCATAAAGATCCAAAAAAGTCAAG
ACACGTGTATAAATATGTTGAAGGTCag

Coding sequence (CDS) from alignment at sc0001453:47730..48957

>TCONS_00036397 ID=TCONS_00036397|Name=TCONS_00036397|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at sc0001453:47730..48957 (Clytia hemisphaerica)
ATCATTCAATACATTTACTGTGGTATTTAGATAACGATTACGAAAGTCAA
CCATACCTAATTGCCAGATCTGCACCGGACTACGACTTCTTTCTGTGCGT
AGAGGGTGATTGTTCCATGCATCTGTGAAAAGATTTAAAGATCTGTTAAT
CCTGGGCAAGAAAACAAAATGCAATACAACTTTAtgtaacaaaatttcaa
tgtttaGAATTCCAGAGTCTGACATGGCTTGAAACAAATAGTAATATGTC
GATGACACACATCTAAAAACGTCCCTCCATAATCGTTCAATACGTTGGTT
TTGCGTAGAAGTGCCTCTTAATGCACTTCCACGACCAACTCCCATGAGAT
TTTCCATCAACTCCCAAACTCGAATGTTTTCCCCACCAAAATCTGTTCTT
ATACGCGAAGGGGTCCCATAATTCTCAATTGCATCCAAAAATAACTCCAA
CACTGTCAAGGCAGTGTTATTAGTTGAACATTTCAAAAAGGTTATCATCC
TAGAAAAACCATCAATACTTCCGTGAATAACAAAACCATATTTGATAAGG
CTGTGGTGGCCATCCAAATGCCACAAACTGTTTGGGGCCCTCACATTGTA
GGAGCGTCTATGAATTACAGCTGCCCAGCGCATTGCACTAAAATCAGGGT
CAAAGCGTTGAAGTAATATACGCACTCTTCTTTGTTGAACATGAATGCCT
AGAGACCGTAAGTGCCCGTATACCATTGAAAACCCAACCAGTCTGCTTTG
ATTATCCAAGTAATTACCAATGATTTCCAACAGCTCATCATCATTCAAAT
CAGTAAACCTACTTGTGTTAGCGATACCATACTCCGATACTCGGCGATAT
ATAGTCCACCTTGACACAGTAAAAACATCACCAATTTTTTTCCAGCTCAT
TCCAAGTTGACGCAAACTGATCAAAGTATCCATATGTATCGAATAACGAG
GTCTTCCTCTTTCCCCTTCAGGATTTTGTTCTAATGTGGGACCAGTTGGA
AACAGCTGCAAATCGGAAGATGgtgaaaaaacaatttctttcaGTTGATT
TAAGTTCTGTTCAAGCATTGATAACGttgccaaaatattttgatcatcAG
TTCTATAAGAACGTAAATCATTACACAATTCATCAACTTGGTTGTCAAGA
TTTCTTCCGTAAATCCCTCTGTTTTCATAAAGATCCAAAAAAGTCAAGAC
ACGTGTATAAATATGTTGAAGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021441XLOC_021441Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036397-proteinTCONS_00036397-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036397-exon-sc0001453-1491911889:47730..48957TCONS_00036397-exon-sc0001453-1491911889:47730..48957Clytia hemisphaericaexon
TCONS_00036397-exon-sc0001453-1510915933:47730..48957TCONS_00036397-exon-sc0001453-1510915933:47730..48957Clytia hemisphaericaexon
TCONS_00036397-exon-sc0001453-1575043694:47730..48957TCONS_00036397-exon-sc0001453-1575043694:47730..48957Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001453supercontigsc0001453:47730..48957 .
Expression
No biomaterial libraries express this feature.
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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