TCONS_00036390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036390
Unique NameTCONS_00036390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036390 ID=TCONS_00036390|Name=TCONS_00036390|organism=Clytia hemisphaerica|type=transcript|length=266bp
TTAAAAGCCACAAAAAGTACCAAAGATTCAATCTGAGTTTGAGCTTCCTG
ATCATTTTGAAAGCAACAACGATTGCTTCGGAGTGAATGGcTATATACGT
GACCCAATTAAGCGTGCTGTGATCGAAGTTCCCGGTGATGGTCACTGCCT
TCTGTATGCTTTTGAGATAGCTCTTCATGTATCCGAAGTGTCTTGCATGA
AACCAACCTATGATACGCTGAAAACGATGGTGCTGAAAGATTTTGCATCG
TACTGGGACAAATACC
Run BLAST on NCBI

transcript from alignment at sc0001453:30102..33527-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036390 ID=TCONS_00036390|Name=TCONS_00036390|organism=Clytia hemisphaerica|type=transcript|length=3426bp|location=Sequence derived from alignment at sc0001453:30102..33527- (Clytia hemisphaerica)
TTAAAAGCCACAAAAAGTACCAAAGATTCAATCTGAGTTTGAGGTAATGC
ATAACTTTTTCTGTGTTATTTTTACGAAGATCATTTGAAAGTAATGACAG
GCAGCAGTTGCAGAACAGAAGTAGTTTGCCATATTTCTTTTTTTTTTCGT
TAGGTATGAAATATACAGATCTTCGTTCAAAACTTTAACCCTATTTTTAT
CAGGGGGTGTTTTCCACCAGGCTGGCACTCTTTTACTAATAGCTCACTGA
AAAAAAAAATTAACACTCTGAAAGTTTTTTACTTTCAATATAAACCTATT
AGCAGCATGGATACCAACTTTTACAATTATACACCGACCAGATCAGGTTT
TATGACTTTTATGTGCAGGCATATCATAAAATTCAGCTAAAACCCTGTAA
AATCCCAAAATCTTAAATTTAGCAAACTTTTGATCTAGGCATCCAACTGA
CTTCAAATTTTGACAGGTTTTAGGTATTAATAACAAATTTTAAAAAATAT
TTAAAAAATTTACAAAAACTGCTGACGTCATCAAAAATGTCGTCATTATT
TTTTGAAAAAATTTACTCATTTTCTGCATGGAATTTTATTAGTATGTTTA
AAATCTACAAATACGTTAAAGATATTATTTTTGGCTTTTAGAAATTCAAA
ACAGAATTGAAAAATCTCCATTCGTTCAACTTTAATTGCAATTTTATTAA
ATAGTACTTTTTCATTAGTCAGCGATAATTGTGAAACTTTGTGATGACGT
CGTCACCTTTATGATGACGTCATCAACCCAAATTTTTTTCTATGAACTTC
TTTTATGGTAAGAACATTTCTGCCAAATTTGAAGTCCATATCTTTTCTAG
ATCAAAAGTTATGCAAGGCTGGTGGAAAACACCCCCCCCCCTTGAGTTGA
AATTACATGACATCAAAGATTTAGCCAAGTTCAAAACTGAGATAAAAAAC
TGGAATGGCTCTAAATGTTCATGTAACATCTGTCGGTAATTGAACACAAA
AGATCTCGTCGTTTTTAATCTTATTTTGTAAAATGTTGGATTTTATTAGT
TATGAATTTTTGATTTGTAACTACGTTCCCCCAACAAGAAAGAAAGAAAT
TATTATTATTATTGAGAATACAAAATCCTAAAATGCCTGATAATAATAGG
GTTAAATGTAGCTATTTTAAGAATTAAAGTAGAAACGCAGCAAAAACTTC
GCATTTTCAATTACACTTGTAATTGATTAAGATTTTTGCCTGTATCAACG
GCTTGCATCGTAACCTGTTAATATAATGCAAAATGTCTTAAACATTCAGC
CTCAACTTACAGTAACTTTTATTTTGGCTATTACAACCGATCCATCAATA
CTATGTATGTTAAATGTATTTTATTGCGTGGGTCATTCTCCAACTGTCTA
AAGACCAAATTTTTATTATTAATGATTTATCAATACATACAATGTAAGCT
TTGACGAACTTTGATCATTCTTGTTTTTTCCTTTCAGCTTCCTGATCATT
TTGAAAGCAACAACGATTGCTTCGGAGTGAATGGGTAAATATCTTCTTTA
ATTGACAGCTCCATACACTTACTTCTAAACCCTGGTTTTGTCCCCTCCCC
TACCTTTGGGTGGATAGCTATCGAAAGAGGAGCCTTAGGGTCGCCTCCGA
CTGCGGTCGCAGACTTACTTACTTAATTCTAAACTCTACAAAACCCTGTA
CCGATAATCTAAGCCAGAAACTTGCGCCACAAATTTCTCTTTAACCCGGG
AAAAGGGGTACTCTTAGTTTCATGTAAAGAATATTAAATAAGGGGTTTCG
ATTCGTTTATCTATATATTAATAGTGGTAGTCTGTATGTCGTTTTGTCTT
TCTTTCTTTCTTTCTGTCTGTGCTACTTTCGTTTTCGCACGCAATGTTTT
TGTTCTTCCAAAAGATGACTTTTATTTTGTTCTTGCTCCACAAATTTGTT
CAACGATATTCGCGCCTTTTTATAAAGACTTTGTTTTGATTGATAGATTA
GACTTTTTATTTTCTTTTTTTTTCTTTCTTTTCTTTTGTTTTATGTTTTG
GAATGCAATTAACGACCTTATTTGATTTGAGACATTCGAATTCTTTTCAA
AACAAAAGAAATCTTTTAAACTGAATCTATTAAAGAAAAGAACAAATTTA
AAATAAAACACAAGATAACATAACACCATAACAAGTTTGTTAGAACAACA
GCAACATTAAAAATACAATCAAAAGGCGGTAAAAACTAGAATTCTTTCTT
CGTAAAAAGGGACCTTTTAAACATGTATGTCGATAATTATTTTGCTGTAA
ATCTAAGTCATTGTTGAATTTGAAAAATTATTGAAGTTATGACGAAGTTA
TTTTATAAAAAGCAACATAAAATTGCGCTATCACGCTTTTTTGTCTGCGT
GTCCTAGCTGCCTTCCGGGGGGACTATGGCTGACTTTCGGCCCTGCCCCT
CGGACCCTTAGGAGAATAAAGAGAAGAAACAGGGGAAATTGTGTGAATTT
TAATTCACTTTTTGGAACTAATTTGACCAAATTTCTATCTTTCTGAGGAC
AAAAAGTTGAAATTTTCCTATTTTTCCAATTCTTAGTGGGACTGAAGTTT
GATTTTCCGATTTTTCAAACTGCCATGTTTCAAAAAAGGCGGCCTTAAGG
CCGGCACATACCCATACCCTTCTCTTGTCTAAGTCACCCGGGAGGGATAG
AGTCAAACTTTGAAGAGAATTCTTCCCTTTAATTATTTTGATTTTATCGT
GTTTAATCCACCTTCCCAACATCTCAAAGGACTTTAAATGCGTTCAGCAA
ACAGCTAAACCGGCGTGCGACGCCGGGTACCGGCTAGTTTATATTATTAC
GATAAACGATATTAAAAATCATTTAGCATTTCGTACTCATTAAAATAAAT
CCAATGCAACCTTTTCTACAAAATACTTCAAATCCTCTTTGGGTCAATGG
ACTTTCTACTCCTTGAACAGGTGACATCAAACGCATATGTAAGAGGCTAA
AAAATTCTTCCTTTGAAATTTCTTCAAATATCTTTCATATCTTCATGTTT
CTTCTTTGTTTCTTTTCGTATTGTCGCATCTTGACCTTATATACCAATTA
CATTTTTGAAGGCAGATAACGGTTTTAAACCGGGGTTACTTAAATAGCGT
GAATCAAAACATAAGGATTTTAATAAAACAGGATCAGTCGGACCTTAGAT
CGTGTTTTTGTCTTGTTCGCTTTCGATATCTGATTGTTTTTTTTTGTTAG
CTATATACGTGACCCAATTAAGCGTGCTGTGATCGAAGTTCCCGGTGATG
GTCACTGCCTTCTGTATGCTTTTGAGATAGCTCTTCATGTATCCGAAGTG
TCTTGCATGAAACCAACCTATGATACGCTGAAAACGATGGTGCTGAAAGA
TTTTGCATCGTACTGGGACAAATACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021434XLOC_021434Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036390-exon-sc0001453-1575043694:33485..33527TCONS_00036390-exon-sc0001453-1575043694:33485..33527Clytia hemisphaericaexon
TCONS_00036390-exon-sc0001453-1575043694:31994..32040TCONS_00036390-exon-sc0001453-1575043694:31994..32040Clytia hemisphaericaexon
TCONS_00036390-exon-sc0001453-1575043694:30102..30277TCONS_00036390-exon-sc0001453-1575043694:30102..30277Clytia hemisphaericaexon
TCONS_00036390-exon-sc0001453-1510915933:33485..33527TCONS_00036390-exon-sc0001453-1510915933:33485..33527Clytia hemisphaericaexon
TCONS_00036390-exon-sc0001453-1510915933:31994..32040TCONS_00036390-exon-sc0001453-1510915933:31994..32040Clytia hemisphaericaexon
TCONS_00036390-exon-sc0001453-1510915933:30102..30277TCONS_00036390-exon-sc0001453-1510915933:30102..30277Clytia hemisphaericaexon
TCONS_00036390-exon-sc0001453-1491911889:33485..33527TCONS_00036390-exon-sc0001453-1491911889:33485..33527Clytia hemisphaericaexon
TCONS_00036390-exon-sc0001453-1491911889:31994..32040TCONS_00036390-exon-sc0001453-1491911889:31994..32040Clytia hemisphaericaexon
TCONS_00036390-exon-sc0001453-1491911889:30102..30277TCONS_00036390-exon-sc0001453-1491911889:30102..30277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001453supercontigsc0001453:30102..33527 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.20073	0	0.679763	0	0	0.639776	0.771863	1.44522	0	0.626658	1.82475	0.399839	0.399283	0.41466	0.340906	0.73169	0.450691	0	1.9146	0	0	0	0	0	2.57834	4.60221	0	0	0	0.678913
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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