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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036388 ID=TCONS_00036388|Name=TCONS_00036388|organism=Clytia hemisphaerica|type=transcript|length=2118bp
CGCCTCTTCCTGAAAGTAATTAAAGGAATTGTATTTAACATATTGTAACC
ACACTGTATAACCGATAACCTATAATCTCTTACTGTATTTAGAaatgaat
tttgttttcttACCTCGTGGATATTCTGGATTATATCCACCAGCCACCTG
TTCCTGGGAGGCGGATCGAAGCCTCCAGCACCCGCAGCTACGTTGAATAG
GTTCCCCTCCATGTACCAGGAGACCTCCGGGTGCTCGCGGTCCAGGGTGG
CTGATGTGAACTCATATAAATCCAAATGGGCAGTCCCCATCGCTGTTCGG
GCTGCATCATCTCCCACATCGTGGACGCGTTTGATCAGATTGACCGCAAC
GGCCTTCACCAATCTAGACggtaaacaatagaaaatttaaTCCATTACCT
GGTGAGTATATAcagtatttttacattttaagtgATTGTTGTTGCGAAAC
GTACGTAAAAATACTGGATAAGCTTTAGCAAGATTATTAATAACAGCGaa
ttcatttaaaattgaaCTTGGTTACTCACCTTAACTCTGACCTCAGAGTA
TATTCGCGGACAATTTGGTCTCCGCCCACTCGCGGGAAGTTCCTCCACAT
TTCGGTCAAATCCTTTAGCTCGACGGCATATCGATAATTGCTTGCGTGAG
ATGACATTGTATGTTTCAAAACGAGATTGTAAGTTTCAATAGCTAAACTT
CTTCGGTTTGTCgagctcaaaatttcatttctatttaTACCGTTCGCTAA
TCTAACCATTTGCTAGTCTAAATTGAGTCTTTAACCCGTGGAGATTTCAG
TTTTTACCAATAATTTACGGAATTTGGAAATCTCAGTATTGTTTTTAACC
ATAATTNaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
gataagaaagaaaatgaaaatacaaaagaaaaataaataatcgtgcgaaa
aagaaaaagaaaagacagaatcaaaatacaaaaaataaaatataaaaaca
cgaaaaaaagaaataaaatagaattttgagaaaacattttactaggattt
tttttttttacttgtaatTATCGCCAAGTATCTTGATTTTACTTAGGAtt
acttttgttatttttatataaCTTTAAAATCCAGTCTGGCTGATTCCAAA
TGATGATTGCATTGTATGTATATTGGAAATAATGGTGTTGTAGCATTACC
AATTGACAAACTTATATTCTTATACGAGCGCATGAACTTTTCGCACTCGC
TTCCCGTAATTCCGTGTAACAGATTTGGCCTCGGATCGTATTCATCGCAT
TGCTTCCGTTACAAGCAACCTTCTCTACATAGACGGAGTGTATGAACTTT
TCACACTTGTATTCCGTTATTATACAGTTTCCAGAAGACGATTTTTAATT
TCATCACGTTGCTTACGTTACGAGCAGCCTTCTCTAGCTGAACGAAGTGT
ATGAACTTTTCACACTCGTATTCCGTTATATCACGAACGACCTCTCCGGT
CCAACGCTTTCTTACGACTACTACGTTCGATTACGCCGTGGAGAATGTCa
tgggacacttccttgaggAGAACCTGACACTTTCTTGGGACAAGAAAAAT
TCAACCCGTGGAGAATGTCatgggacacttccttgaggAGAACCTGACAC
TTTCTTGGGACAAGAAAAATTCAACCCGTGGAGAATGTCAGCTGGAGCTT
AATACAAGCTGGCCACCCCATCAGAAAATGGCTCTACCAAGACCAATATC
ACATAACGATCGATGATTAAACCTACGCAAATGCTGAAACATGCTCGAAC
CGCAACAAACATACGAATGAGATCCATGCGGCCCAAGACCAATATCTGTT
ACTTTATTTAAATCTAACGACATTCCATTGACATTCCGTTGACAGCTATA
AAAGCTGCAACTCAAACGATGAAAGACGGAGATTGAAAGAGACACGAATA
GTGTATAACCTATTTTATAAGATGTTTCATTTAAACTAAACGCTGTCAAA
TTATTATAAGTTGAAAATGAGAATATAAGTTAATCGATGGTACGAAACCA
TATACAGTCTTAAATTACTGATCTCTCCGCTGAGCCGTCTCCCCCTTTGT
TAGCCCAGTCTACAATAT Run BLAST on NCBI transcript from alignment at sc0001453:18298..20474+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036388 ID=TCONS_00036388|Name=TCONS_00036388|organism=Clytia hemisphaerica|type=transcript|length=2177bp|location=Sequence derived from alignment at sc0001453:18298..20474+ (Clytia hemisphaerica)
CGCCTCTTCCTGAAAGTAATTAAAGGAATTGTATTTAACATATTGTAACC
ACACTGTATAACCGATAACCTATAATCTCTTACTGTATTTAGAaatgaat
tttgttttcttACCTCGTGGATATTCTGGATTATATCCACCAGCCACCTG
TTCCTGGGAGGCGGATCGAAGCCTCCAGCACCCGCAGCTACGTTGAATAG
GTTCCCCTCCATGTACCAGGAGACCTCCGGGTGCTCGCGGTCCAGGGTGG
CTGATGTGAACTCATATAAATCCAAATGGGCAGTCCCCATCGCTGTTCGG
GCTGCATCATCTCCCACATCGTGGACGCGTTTGATCAGATTGACCGCAAC
GGCCTTCACCAATCTAGACggtaaacaatagaaaatttaaTCCATTACCT
GGTGAGTATATAcagtatttttacattttaagtgATTGTTGTTGCGAAAC
GTACGTAAAAATACTGGATAAGCTTTAGCAAGATTATTAATAACAGCGaa
ttcatttaaaattgaaCTTGGTTACTCACCTTAACTCTGACCTCAGAGTA
TATTCGCGGACAATTTGGTCTCCGCCCACTCGCGGGAAGTTCCTCCACAT
TTCGGTCAAATCCTTTAGCTCGACGGCATATCGATAATTGCTTGCGTGAG
ATGACATTGTATGTTTCAAAACGAGATTGTAAGTTTCAATAGCTAAACTT
CTTCGGTTTGTCgagctcaaaatttcatttctatttaTACCGTTCGCTAA
TCTAACCATTTGCTAGTCTAAATTGAGTCTTTAACCCGTGGAGATTTCAG
TTTTTACCAATAATTTACGGAATTTGGAAATCTCAGTATTGTTTTTAACC
ATAATTNaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
gataagaaagaaaatgaaaatacaaaagaaaaataaataatcgtgcgaaa
aagaaaaagaaaagacagaatcaaaatacaaaaaataaaatataaaaaca
cgaaaaaaagaaataaaatagaattttgagaaaacattttactaggattt
tttttttttacttgtaatTATCGCCAAGTATCTTGATTTTACTTAGGAtt
acttttgttatttttatataaCTTTAAAATCCAGTCTGGCTGATTCCAAA
TGATGATTGCATTGTATGTATATTGGAAATAATGGTGTTGTAGCATTACC
AATTGACAAACTTATATTCTTATACGAGCGCATGAACTTTTCGCACTCGC
TTCCCGTAATTCCGTGTAACAGATTTGGCCTCGGATCGTATTCATCGCAT
TGCTTCCGTTACAAGCAACCTTCTCTACATAGACGGAGTGTATGAACTTT
TCACACTTGTATTCCGTTATTATACAGTTTCCAGAAGACGATTTTTAATT
TCATCACGTTGCTTACGTTACGAGCAGCCTTCTCTAGCTGAACGAAGTGT
ATGAACTTTTCACACTCGTATTCCGTTATATCACGAACGACCTCTCCGGT
CCAACGCTTTCTTACGACTACTACGTTCGATTACGCCGTGGAGAATGTCa
tgggacacttccttgaggAGAACCTGACACTTTCTTGGGACAAGAAAAAT
TCAACCCGTGGAGAATGTCatgggacacttccttgaggAGAACCTGACAC
TTTCTTGGGACAAGAAAAATTCAACCCGTGGAGAATGTCAGCTGGAGCTT
AATACAAGCTGGCCACCCCATCAGAAAATGGCTCTACCAAGACCAATATC
ACATAACGATCGATGATTAAAACTTACGAAAATGCTGAAACATGCTGAAA
TTATACCTTACATAACGATCGATGATTAAACCTACGCAAATGCTGAAACA
TGCTCGAACCGCAACAAACATACGAATGAGATCCATGCGGCCCAAGACCA
ATATCTGTTACTTTATTTAAATCTAACGACATTCCATTGACATTCCGTTG
ACAGCTATAAAAGCTGCAACTCAAACGATGAAAGACGGAGATTGAAAGAG
ACACGAATAGTGTATAACCTATTTTATAAGATGTTTCATTTAAACTAAAC
GCTGTCAAATTATTATAAGTTGAAAATGAGAATATAAGTTAATCGATGGT
ACGAAACCATATACAGTCTTAAATTACTGATCTCTCCGCTGAGCCGTCTC
CCCCTTTGTTAGCCCAGTCTACAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036388-exon-sc0001453-1491911889:18298..20049 | TCONS_00036388-exon-sc0001453-1491911889:18298..20049 | Clytia hemisphaerica | exon |
| TCONS_00036388-exon-sc0001453-1510915933:18298..20049 | TCONS_00036388-exon-sc0001453-1510915933:18298..20049 | Clytia hemisphaerica | exon |
| TCONS_00036388-exon-sc0001453-1575043694:18298..20049 | TCONS_00036388-exon-sc0001453-1575043694:18298..20049 | Clytia hemisphaerica | exon |
| TCONS_00036388-exon-sc0001453-1491911889:20109..20474 | TCONS_00036388-exon-sc0001453-1491911889:20109..20474 | Clytia hemisphaerica | exon |
| TCONS_00036388-exon-sc0001453-1510915933:20109..20474 | TCONS_00036388-exon-sc0001453-1510915933:20109..20474 | Clytia hemisphaerica | exon |
| TCONS_00036388-exon-sc0001453-1575043694:20109..20474 | TCONS_00036388-exon-sc0001453-1575043694:20109..20474 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001453 | supercontig | sc0001453:18298..20474 + |
Blast
The following BLAST results are available for this feature:
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