TCONS_00036387 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036387
Unique NameTCONS_00036387
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036387 ID=TCONS_00036387|Name=TCONS_00036387|organism=Clytia hemisphaerica|type=transcript|length=341bp
tttagtatatttaaaaaagcaaaaatattttatagttCAATTTTCAGTGT
CTTGTTTTTGTCAGTGTCTTTTTGTCCCCAGCGTCCTTTGTTTTCCCAGT
GCTTTCTTTTTCAGCGTATTTTCTCTCTTGTGCATTCTCGTGTTTCATGC
GTCGTTTGTTTTGTTCTATGTTTTAAAGTCATTTATCTATGTTATCAATT
ATTTCAAACACTTTGTCAGTTATTatcattttttcatttagtCATTATCT
AGTAATTAATTATTTCACACgcattttatttaattatcatttGATTTCTC
AAGAGTGTTATATATTAATTGTTTTTATATCTTGTCAAACT
Run BLAST on NCBI

transcript from alignment at sc0001452:50399..50739

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036387 ID=TCONS_00036387|Name=TCONS_00036387|organism=Clytia hemisphaerica|type=transcript|length=341bp|location=Sequence derived from alignment at sc0001452:50399..50739 (Clytia hemisphaerica)
AGTTTGACAAGATATAAAAACAATTAATATATAACACTCTTGAGAAATCa
aatgataattaaataaaatgcGTGTGAAATAATTAATTACTAGATAATGa
ctaaatgaaaaaatgatAATAACTGACAAAGTGTTTGAAATAATTGATAA
CATAGATAAATGACTTTAAAACATAGAACAAAACAAACGACGCATGAAAC
ACGAGAATGCACAAGAGAGAAAATACGCTGAAAAAGAAAGCACTGGGAAA
ACAAAGGACGCTGGGGACAAAAAGACACTGACAAAAACAAGACACTGAAA
ATTGaactataaaatatttttgcttttttaaatatactaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021431XLOC_021431Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036387-exon-sc0001452-1491911889:50399..50739TCONS_00036387-exon-sc0001452-1491911889:50399..50739Clytia hemisphaericaexon
TCONS_00036387-exon-sc0001452-1510915933:50399..50739TCONS_00036387-exon-sc0001452-1510915933:50399..50739Clytia hemisphaericaexon
TCONS_00036387-exon-sc0001452-1575043694:50399..50739TCONS_00036387-exon-sc0001452-1575043694:50399..50739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001452supercontigsc0001452:50399..50739 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16167	0	0.400382	0.595448	0	0	0	0.323495	0	0	0.75243	0.536996	0.17875	0	0	0.866419	0	0	0.775071	0	1.93084	0.505394	0.658501	0.402068	0.577131	0.257538	0.661988	0	2.42732	1.71009
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036387 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top