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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036386 ID=TCONS_00036386|Name=TCONS_00036386|organism=Clytia hemisphaerica|type=transcript|length=1428bp
ctcttttgggaattggatgaatgattttcgataagaaatgcaataaaaat
gcttcgaaaaatcatttaatgagggaaggagagtgaacaataatatcatt
actgcggacatagctagtacacgagaaatcggcaaaaatctgttacttgt
atatccagtgtataataaatccttggtgcAGCAAATCGTTTCAATCAATT
CAATTCATTCTTTCAACTGAATCAGTCAAATCTCTCAACTTATTATCAAC
TTGTTCACGTTACTCAATTTACGTGAATGTCAAGACGTAATCTTCGTCGG
ATCGATTACAAAATACTCAACTCTACTGGGCAGCTAGTCGAGAATGTTGA
CACGTCAAAGGAGTCTTCAACTGAATTTCAAATCTACTCAACAAAATCAG
CATTCAACGAGATGCCATCTCAATCtgcaatcaaaatcaaagtccTTATC
CAGGAGGTAGCTGACACTATTGACGAAAATCCTATCGAACCTGGAGCTGA
CTACAAAGACGTCATCGAGAGGTTAATCGAGTTACGTAAATCCATTCGTT
CCAATGAACAAACTCTCGTTACTGAAACCCCCGATCCAATCTTGACAAAA
CCATCCTAGAGACACTCAACGTGATGAAGGATTACATCAAGGATGCTACC
AAATCCAAACGTCATTTTCAAATGGTACAAGCAAAGCAGGAAAGTGATGC
TGTTGACCGTAAGGAAAAATCACTTCTATTCGCAataaaagattctaaaa
attcTATCGAGGAGCTTATTACTCATTTCTCACGCCAACCAAAAGACTGT
TCCAACGAGGAGTTAATGGACATGAAATCAAATCTATCATCACATATCAA
CTTAGTCAATGAAACTTCAAAACGTCTTGAATCCATCTCTTCAGCTGAAA
CCAACAATGAAACAACTACAGAAGCAATCCAACGTCTATTGGAACGGTAT
GATCATTTGACTTCATTAAAATCTGTGTACATCAGAGATCTCAACAAAGA
AATCGATGATCGTCAAGTCTATAAACAAAAGTTGTTTTCTGAATCGAACC
TGAACATTAAACTTGAGAAATTTTCTGGATATTCAGATAGTATCGAAATT
TATACCTtcaagtcaaaatttgaaaaactacaTCTCAAAACTACTCCGAA
ACATCTACTTGCTGATTTACTCAAGAATAACTATCTGAAGGAACCAGCCC
TGAGTTGTGTCAAAACTCAAGATGGCATAGACGAAATTTGGGATCGACTG
AATCAAGCCTATGGCAACGTCATACTCATCCTCCAAAGAAAAATCAACCA
ACTGACGTCATCAAGTTCCATTTAACGCTCCAAAGACACTGGATCAATCA
TTGAATCAATGACCAATATTGTCAACCTCATCAAGGACCTTACATCTTTG
GCAAGGGAACATCACGTCGAGAATTATC Run BLAST on NCBI protein sequence of TCONS_00036386-protein >TCONS_00036386-protein ID=TCONS_00036386-protein|Name=TCONS_00036386-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MKDYIKDATKSKRHFQMVQAKQESDAVDRKEKSLLFAIKDSKNSIEELIT
HFSRQPKDCSNEELMDMKSNLSSHINLVNETSKRLESISSAETNNETTTE
AIQRLLERYDHLTSLKSVYIRDLNKEIDDRQVYKQKLFSESNLNIKLEKF
SGYSDSIEIYTFKSKFEKLHLKTTPKHLLADLLKNNYLKEPALSCVKTQD
GIDEIWDRLNQAYGNVILILQRKINQLTSSSSI Run BLAST on NCBI transcript from alignment at sc0001452:48139..49566 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036386 ID=TCONS_00036386|Name=TCONS_00036386|organism=Clytia hemisphaerica|type=transcript|length=1428bp|location=Sequence derived from alignment at sc0001452:48139..49566 (Clytia hemisphaerica)
GATAATTCTCGACGTGATGTTCCCTTGCCAAAGATGTAAGGTCCTTGATG
AGGTTGACAATATTGGTCATTGATTCAATGATTGATCCAGTGTCTTTGGA
GCGTTAAATGGAACTTGATGACGTCAGTTGGTTGATTTTTCTTTGGAGGA
TGAGTATGACGTTGCCATAGGCTTGATTCAGTCGATCCCAAATTTCGTCT
ATGCCATCTTGAGTTTTGACACAACTCAGGGCTGGTTCCTTCAGATAGTT
ATTCTTGAGTAAATCAGCAAGTAGATGTTTCGGAGTAGTTTTGAGAtgta
gtttttcaaattttgacttgaAGGTATAAATTTCGATACTATCTGAATAT
CCAGAAAATTTCTCAAGTTTAATGTTCAGGTTCGATTCAGAAAACAACTT
TTGTTTATAGACTTGACGATCATCGATTTCTTTGTTGAGATCTCTGATGT
ACACAGATTTTAATGAAGTCAAATGATCATACCGTTCCAATAGACGTTGG
ATTGCTTCTGTAGTTGTTTCATTGTTGGTTTCAGCTGAAGAGATGGATTC
AAGACGTTTTGAAGTTTCATTGACTAAGTTGATATGTGATGATAGATTTG
ATTTCATGTCCATTAACTCCTCGTTGGAACAGTCTTTTGGTTGGCGTGAG
AAATGAGTAATAAGCTCCTCGATAgaatttttagaatcttttatTGCGAA
TAGAAGTGATTTTTCCTTACGGTCAACAGCATCACTTTCCTGCTTTGCTT
GTACCATTTGAAAATGACGTTTGGATTTGGTAGCATCCTTGATGTAATCC
TTCATCACGTTGAGTGTCTCTAGGATGGTTTTGTCAAGATTGGATCGGGG
GTTTCAGTAACGAGAGTTTGTTCATTGGAACGAATGGATTTACGTAACTC
GATTAACCTCTCGATGACGTCTTTGTAGTCAGCTCCAGGTTCGATAGGAT
TTTCGTCAATAGTGTCAGCTACCTCCTGGATAAggactttgattttgatt
gcaGATTGAGATGGCATCTCGTTGAATGCTGATTTTGTTGAGTAGATTTG
AAATTCAGTTGAAGACTCCTTTGACGTGTCAACATTCTCGACTAGCTGCC
CAGTAGAGTTGAGTATTTTGTAATCGATCCGACGAAGATTACGTCTTGAC
ATTCACGTAAATTGAGTAACGTGAACAAGTTGATAATAAGTTGAGAGATT
TGACTGATTCAGTTGAAAGAATGAATTGAATTGATTGAAACGATTTGCTg
caccaaggatttattatacactggatatacaagtaacagatttttgccga
tttctcgtgtactagctatgtccgcagtaatgatattattgttcactctc
cttccctcattaaatgatttttcgaagcatttttattgcatttcttatcg
aaaatcattcatccaattcccaaaagag Coding sequence (CDS) from alignment at sc0001452:48139..49566 >TCONS_00036386 ID=TCONS_00036386|Name=TCONS_00036386|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0001452:48139..49566 (Clytia hemisphaerica)
TTAAATGGAACTTGATGACGTCAGTTGGTTGATTTTTCTTTGGAGGATGA
GTATGACGTTGCCATAGGCTTGATTCAGTCGATCCCAAATTTCGTCTATG
CCATCTTGAGTTTTGACACAACTCAGGGCTGGTTCCTTCAGATAGTTATT
CTTGAGTAAATCAGCAAGTAGATGTTTCGGAGTAGTTTTGAGAtgtagtt
tttcaaattttgacttgaAGGTATAAATTTCGATACTATCTGAATATCCA
GAAAATTTCTCAAGTTTAATGTTCAGGTTCGATTCAGAAAACAACTTTTG
TTTATAGACTTGACGATCATCGATTTCTTTGTTGAGATCTCTGATGTACA
CAGATTTTAATGAAGTCAAATGATCATACCGTTCCAATAGACGTTGGATT
GCTTCTGTAGTTGTTTCATTGTTGGTTTCAGCTGAAGAGATGGATTCAAG
ACGTTTTGAAGTTTCATTGACTAAGTTGATATGTGATGATAGATTTGATT
TCATGTCCATTAACTCCTCGTTGGAACAGTCTTTTGGTTGGCGTGAGAAA
TGAGTAATAAGCTCCTCGATAgaatttttagaatcttttatTGCGAATAG
AAGTGATTTTTCCTTACGGTCAACAGCATCACTTTCCTGCTTTGCTTGTA
CCATTTGAAAATGACGTTTGGATTTGGTAGCATCCTTGATGTAATCCTTC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036386-exon-sc0001452-1491911889:48139..49566 | TCONS_00036386-exon-sc0001452-1491911889:48139..49566 | Clytia hemisphaerica | exon |
| TCONS_00036386-exon-sc0001452-1510915933:48139..49566 | TCONS_00036386-exon-sc0001452-1510915933:48139..49566 | Clytia hemisphaerica | exon |
| TCONS_00036386-exon-sc0001452-1575043694:48139..49566 | TCONS_00036386-exon-sc0001452-1575043694:48139..49566 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001452 | supercontig | sc0001452:48139..49566 . |
Blast
The following BLAST results are available for this feature:
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