TCONS_00036385 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036385
Unique NameTCONS_00036385
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036385 ID=TCONS_00036385|Name=TCONS_00036385|organism=Clytia hemisphaerica|type=transcript|length=610bp
ACTTGGTCAAAACTGTGCACCTTCCTCGAAGATGAGCTGAAAATCCAACA
CCAGAAGCTGACAGTGAAATCAAGCATTCAAGACAACAAGACCGATAACA
AACGTCCAAACAACCAAGACTCATCAAAGAACAACGGGACTCAGAGGTAT
GGATTTTCTTCTGTTCCTTCCATACCTCAATCTGAGCCCATTTGCTTTAT
CTGTGGTGCAAAAGACGGAACTGATGAACATGTATCCACTCTTGGTCCTG
AAGGCACCAGGATTCTTCAGTACTACACCTGCAAGTAGTTTGTAGAATTA
AGTCCAGCTGATAGACTCTCATTACTAAGAAGCAAAAGATACTGCTTTCA
GTGCCTTTTTCCAGGTGCTGATGCTTCATCACCTAAGCACAAAGAAGGGA
GATGTCAACGTGATTACACCTGCCCAAATCCTATTCACCAGAAGTATCCA
ACCAGAAAACACGTCCTTGTTTGCAACGACCACAAGGAGGATCAAGTCAA
CAAAGATTTGTTATCAACTTACAAACAACGCTGTGTCCGAAGCTCCAATC
TGccagaattttccaaaaacatcAGTTTATCATTTCATGCACATGAATCG
TTCAAGACNN
Run BLAST on NCBI

transcript from alignment at sc0001452:47310..47919

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036385 ID=TCONS_00036385|Name=TCONS_00036385|organism=Clytia hemisphaerica|type=transcript|length=610bp|location=Sequence derived from alignment at sc0001452:47310..47919 (Clytia hemisphaerica)
NNGTCTTGAACGATTCATGTGCATGAAATGATAAACTgatgtttttggaa
aattctggCAGATTGGAGCTTCGGACACAGCGTTGTTTGTAAGTTGATAA
CAAATCTTTGTTGACTTGATCCTCCTTGTGGTCGTTGCAAACAAGGACGT
GTTTTCTGGTTGGATACTTCTGGTGAATAGGATTTGGGCAGGTGTAATCA
CGTTGACATCTCCCTTCTTTGTGCTTAGGTGATGAAGCATCAGCACCTGG
AAAAAGGCACTGAAAGCAGTATCTTTTGCTTCTTAGTAATGAGAGTCTAT
CAGCTGGACTTAATTCTACAAACTACTTGCAGGTGTAGTACTGAAGAATC
CTGGTGCCTTCAGGACCAAGAGTGGATACATGTTCATCAGTTCCGTCTTT
TGCACCACAGATAAAGCAAATGGGCTCAGATTGAGGTATGGAAGGAACAG
AAGAAAATCCATACCTCTGAGTCCCGTTGTTCTTTGATGAGTCTTGGTTG
TTTGGACGTTTGTTATCGGTCTTGTTGTCTTGAATGCTTGATTTCACTGT
CAGCTTCTGGTGTTGGATTTTCAGCTCATCTTCGAGGAAGGTGCACAGTT
TTGACCAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021429XLOC_021429Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036385-exon-sc0001452-1491911889:47310..47919TCONS_00036385-exon-sc0001452-1491911889:47310..47919Clytia hemisphaericaexon
TCONS_00036385-exon-sc0001452-1510915933:47310..47919TCONS_00036385-exon-sc0001452-1510915933:47310..47919Clytia hemisphaericaexon
TCONS_00036385-exon-sc0001452-1575043694:47310..47919TCONS_00036385-exon-sc0001452-1575043694:47310..47919Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001452supercontigsc0001452:47310..47919 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27628	0.87286	0.781386	0.338936	0.803831	0.473347	0.195307	0.170797	0.0745546	0	0.370573	0.214718	0.616218	0.244427	0.0704861	0.353083	0.335469	0.827282	0.551062	1.06235	0.808225	0.687521	0.524306	0.86505	3.82264	1.13392	0.464826	1.21537	0.330766	0.90028
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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