TCONS_00036381 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036381
Unique NameTCONS_00036381
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036381 ID=TCONS_00036381|Name=TCONS_00036381|organism=Clytia hemisphaerica|type=transcript|length=305bp
GGAGACTTCGAATGTCTCGACTTGATAACGCCGAATCGTTTACTATTGGG
ACGAAATAATAGTCGTTGCCCCACTGGCATTCTATCATCTACCAACCCAT
CAAATATCATCAAGGAGAACCAATTCATCTTCAATGCCTGGTTTGAAGTT
TGGCTTCTCGTCCATGTGCCAAAACTCATGCACCAGCAAAAATCGTTTAC
ATCAGACAAAATCAACGTTGGCGATATCATCTTGTTCACCAAAAACGAAT
CACTTCTGTCAAACTCGTACACCTATGGAATCGTCAAGAGTCTCGAATTT
GGTCG
Run BLAST on NCBI

protein sequence of TCONS_00036381-protein

>TCONS_00036381-protein ID=TCONS_00036381-protein|Name=TCONS_00036381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
GDFECLDLITPNRLLLGRNNSRCPTGILSSTNPSNIIKENQFIFNAWFEV
WLLVHVPKLMHQQKSFTSDKINVGDIILFTKNESLLSNSYTYGIVKSLEF
G
Run BLAST on NCBI

transcript from alignment at sc0001452:43201..43505

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036381 ID=TCONS_00036381|Name=TCONS_00036381|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at sc0001452:43201..43505 (Clytia hemisphaerica)
CGACCAAATTCGAGACTCTTGACGATTCCATAGGTGTACGAGTTTGACAG
AAGTGATTCGTTTTTGGTGAACAAGATGATATCGCCAACGTTGATTTTGT
CTGATGTAAACGATTTTTGCTGGTGCATGAGTTTTGGCACATGGACGAGA
AGCCAAACTTCAAACCAGGCATTGAAGATGAATTGGTTCTCCTTGATGAT
ATTTGATGGGTTGGTAGATGATAGAATGCCAGTGGGGCAACGACTATTAT
TTCGTCCCAATAGTAAACGATTCGGCGTTATCAAGTCGAGACATTCGAAG
TCTCC

Coding sequence (CDS) from alignment at sc0001452:43201..43505

>TCONS_00036381 ID=TCONS_00036381|Name=TCONS_00036381|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0001452:43201..43505 (Clytia hemisphaerica)
ACCAAATTCGAGACTCTTGACGATTCCATAGGTGTACGAGTTTGACAGAA
GTGATTCGTTTTTGGTGAACAAGATGATATCGCCAACGTTGATTTTGTCT
GATGTAAACGATTTTTGCTGGTGCATGAGTTTTGGCACATGGACGAGAAG
CCAAACTTCAAACCAGGCATTGAAGATGAATTGGTTCTCCTTGATGATAT
TTGATGGGTTGGTAGATGATAGAATGCCAGTGGGGCAACGACTATTATTT
CGTCCCAATAGTAAACGATTCGGCGTTATCAAGTCGAGACATTCGAAGTC
TCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021425XLOC_021425Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036381-exon-sc0001452-1491911889:43201..43505TCONS_00036381-exon-sc0001452-1491911889:43201..43505Clytia hemisphaericaexon
TCONS_00036381-exon-sc0001452-1510915933:43201..43505TCONS_00036381-exon-sc0001452-1510915933:43201..43505Clytia hemisphaericaexon
TCONS_00036381-exon-sc0001452-1575043694:43201..43505TCONS_00036381-exon-sc0001452-1575043694:43201..43505Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036381-proteinTCONS_00036381-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001452supercontigsc0001452:43201..43505 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16681	1.00714	0.561541	0	0	0	0	0.444459	0	0	0.514842	0.245931	0.24559	0.674409	0.419367	0.225022	0	0.593221	0	0	1.17629	0.740997	0	1.60063	0	0.353839	0	0.807906	4.52722	3.40795
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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