TCONS_00036370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036370
Unique NameTCONS_00036370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036370 ID=TCONS_00036370|Name=TCONS_00036370|organism=Clytia hemisphaerica|type=transcript|length=364bp
ATTTTGCGACGATTTTCAAGTATATCCAAATCAGCATCTTTCAATAACGA
AGTGGGTGAACATTCCCTGTCCCACCTATTGTAAATCCAACGGATGGATT
TTCGTTGAACGCTTTCTAACTGCGATGTTATGTTCAATTTCCCAGGTGAG
TCCCATACTGAAGATGCATATTCTACTAGAGGTCTGATGTATGTCTTATA
GCAAACGAGACGAGTTTCTGTGTCTGTcatttgaagattcctttgaagAA
ATATCCTGGTAGAATTTGCCTTAGCAGTGATGACTGAAACATGATGTTTC
CAAGAGAGATTCTTGGAAATGGTTACTCCAAGGTATTTCGCTTTATCAAC
TGCCTTCAAGTTTT
Run BLAST on NCBI

protein sequence of TCONS_00036370-protein

>TCONS_00036370-protein ID=TCONS_00036370-protein|Name=TCONS_00036370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
NLKAVDKAKYLGVTISKNLSWKHHVSVITAKANSTRIFLQRNLQMTDTET
RLVCYKTYIRPLVEYASSVWDSPGKLNITSQLESVQRKSIRWIYNRWDRE
CSPTSLLKDADLDILENRRK
Run BLAST on NCBI

transcript from alignment at sc0001449:32204..32567

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036370 ID=TCONS_00036370|Name=TCONS_00036370|organism=Clytia hemisphaerica|type=transcript|length=364bp|location=Sequence derived from alignment at sc0001449:32204..32567 (Clytia hemisphaerica)
AAAACTTGAAGGCAGTTGATAAAGCGAAATACCTTGGAGTAACCATTTCC
AAGAATCTCTCTTGGAAACATCATGTTTCAGTCATCACTGCTAAGGCAAA
TTCTACCAGGATATTTcttcaaaggaatcttcaaatgACAGACACAGAAA
CTCGTCTCGTTTGCTATAAGACATACATCAGACCTCTAGTAGAATATGCA
TCTTCAGTATGGGACTCACCTGGGAAATTGAACATAACATCGCAGTTAGA
AAGCGTTCAACGAAAATCCATCCGTTGGATTTACAATAGGTGGGACAGGG
AATGTTCACCCACTTCGTTATTGAAAGATGCTGATTTGGATATACTTGAA
AATCGTCGCAAAAT

Coding sequence (CDS) from alignment at sc0001449:32204..32567

>TCONS_00036370 ID=TCONS_00036370|Name=TCONS_00036370|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0001449:32204..32567 (Clytia hemisphaerica)
AACTTGAAGGCAGTTGATAAAGCGAAATACCTTGGAGTAACCATTTCCAA
GAATCTCTCTTGGAAACATCATGTTTCAGTCATCACTGCTAAGGCAAATT
CTACCAGGATATTTcttcaaaggaatcttcaaatgACAGACACAGAAACT
CGTCTCGTTTGCTATAAGACATACATCAGACCTCTAGTAGAATATGCATC
TTCAGTATGGGACTCACCTGGGAAATTGAACATAACATCGCAGTTAGAAA
GCGTTCAACGAAAATCCATCCGTTGGATTTACAATAGGTGGGACAGGGAA
TGTTCACCCACTTCGTTATTGAAAGATGCTGATTTGGATATACTTGAAAA
TCGTCGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021414XLOC_021414Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036370-proteinTCONS_00036370-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036370-exon-sc0001449-1491911889:32204..32567TCONS_00036370-exon-sc0001449-1491911889:32204..32567Clytia hemisphaericaexon
TCONS_00036370-exon-sc0001449-1510915933:32204..32567TCONS_00036370-exon-sc0001449-1510915933:32204..32567Clytia hemisphaericaexon
TCONS_00036370-exon-sc0001449-1575043694:32204..32567TCONS_00036370-exon-sc0001449-1575043694:32204..32567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001449supercontigsc0001449:32204..32567 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.87934	0.707782	2.86301	1.00034	7.69367	6.36744	4.30568	3.03393	2.03119	4.17332	1.5312	2.13235	2.28299	1.22659	0.76286	0.755452	1.9533	1.58806	0.420403	2.34719	0.822314	2.43813	0	0.362258	5.80802	3.26563	0.995708	0.813848	1.42334	0.487229
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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