TCONS_00036368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036368
Unique NameTCONS_00036368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036368 ID=TCONS_00036368|Name=TCONS_00036368|organism=Clytia hemisphaerica|type=transcript|length=491bp
ATGACCATATTGAAAGAAACTACCAACCGCCAACCACCAATGCCAGTTCT
TCATCACGATGAGGTCGAAAATGAACTGGAAAATATTGAAAGAGTAATTG
AGGATACCAGACCAAACCTTTTCTTGCCTGGTGGTTACATGGAGGAACTC
TTGGGGAATGGGACAATCAACAATTCAAAGTCGGAGGTTTCAACTGAAGA
AACAGAGGCAATTGCCAAATCCGCCATCAAAATGATGAAGAGTAAATTCA
GCCCGCAAGAACTCAAATACGGGAACATCAAAGGCACCAGCAGGATGAAG
AAACTAAACGAGGCAACAATGAGGAATATTTATTGTTCCATTCGAGAAAA
ATTCAAACTCCGCCCTGATTTTGTGTTCCTGGGACCCATTGAAACTAGAA
TTGGGATAAAATTGAATGCCCATAGGAAGAATATCAAATTAATAACACCG
GAAATTCCAAGTCAAAGCGCCAGCTCTTAAATCATATGGTG
Run BLAST on NCBI

protein sequence of TCONS_00036368-protein

>TCONS_00036368-protein ID=TCONS_00036368-protein|Name=TCONS_00036368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MTILKETTNRQPPMPVLHHDEVENELENIERVIEDTRPNLFLPGGYMEEL
LGNGTINNSKSEVSTEETEAIAKSAIKMMKSKFSPQELKYGNIKGTSRMK
KLNEATMRNIYCSIREKFKLRPDFVFLGPIETRIGIKLNAHRKNIKLITP
EIPSQSASS
Run BLAST on NCBI

transcript from alignment at sc0001449:20266..20756

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036368 ID=TCONS_00036368|Name=TCONS_00036368|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at sc0001449:20266..20756 (Clytia hemisphaerica)
CACCATATGATTTAAGAGCTGGCGCTTTGACTTGGAATTTCCGGTGTTAT
TAATTTGATATTCTTCCTATGGGCATTCAATTTTATCCCAATTCTAGTTT
CAATGGGTCCCAGGAACACAAAATCAGGGCGGAGTTTGAATTTTTCTCGA
ATGGAACAATAAATATTCCTCATTGTTGCCTCGTTTAGTTTCTTCATCCT
GCTGGTGCCTTTGATGTTCCCGTATTTGAGTTCTTGCGGGCTGAATTTAC
TCTTCATCATTTTGATGGCGGATTTGGCAATTGCCTCTGTTTCTTCAGTT
GAAACCTCCGACTTTGAATTGTTGATTGTCCCATTCCCCAAGAGTTCCTC
CATGTAACCACCAGGCAAGAAAAGGTTTGGTCTGGTATCCTCAATTACTC
TTTCAATATTTTCCAGTTCATTTTCGACCTCATCGTGATGAAGAACTGGC
ATTGGTGGTTGGCGGTTGGTAGTTTCTTTCAATATGGTCAT

Coding sequence (CDS) from alignment at sc0001449:20266..20756

>TCONS_00036368 ID=TCONS_00036368|Name=TCONS_00036368|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0001449:20266..20756 (Clytia hemisphaerica)
TTAAGAGCTGGCGCTTTGACTTGGAATTTCCGGTGTTATTAATTTGATAT
TCTTCCTATGGGCATTCAATTTTATCCCAATTCTAGTTTCAATGGGTCCC
AGGAACACAAAATCAGGGCGGAGTTTGAATTTTTCTCGAATGGAACAATA
AATATTCCTCATTGTTGCCTCGTTTAGTTTCTTCATCCTGCTGGTGCCTT
TGATGTTCCCGTATTTGAGTTCTTGCGGGCTGAATTTACTCTTCATCATT
TTGATGGCGGATTTGGCAATTGCCTCTGTTTCTTCAGTTGAAACCTCCGA
CTTTGAATTGTTGATTGTCCCATTCCCCAAGAGTTCCTCCATGTAACCAC
CAGGCAAGAAAAGGTTTGGTCTGGTATCCTCAATTACTCTTTCAATATTT
TCCAGTTCATTTTCGACCTCATCGTGATGAAGAACTGGCATTGGTGGTTG
GCGGTTGGTAGTTTCTTTCAATATGGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021412XLOC_021412Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036368-exon-sc0001449-1491911889:20266..20756TCONS_00036368-exon-sc0001449-1491911889:20266..20756Clytia hemisphaericaexon
TCONS_00036368-exon-sc0001449-1510915933:20266..20756TCONS_00036368-exon-sc0001449-1510915933:20266..20756Clytia hemisphaericaexon
TCONS_00036368-exon-sc0001449-1575043694:20266..20756TCONS_00036368-exon-sc0001449-1575043694:20266..20756Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036368-proteinTCONS_00036368-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001449supercontigsc0001449:20266..20756 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.136207	0	0	0.106016	0	0.12746	0	0	0	0.0714377	0	0	0	0	0	0.121638	0	0.174131	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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