TCONS_00036367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036367
Unique NameTCONS_00036367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036367 ID=TCONS_00036367|Name=TCONS_00036367|organism=Clytia hemisphaerica|type=transcript|length=727bp
GTGAAACACATATCTGGTCTTATTCTGCACTGTAACTTTCAACCTTTAGT
TTGTATCTGTGGTCCATGTTGGGGTGGTTTATTTATGGCAAAGGAATTTT
CTATCAGAAATATCAGTTTTTCCAGTTCCCTTTGTTagctttgtattttt
ttagcttTCAGGAATAAACTAAATATAAGTCATGAGTGAACAACTGAAGT
ACATAGTGGATGGGCTCAATGATGTTCCTTATAACAAGAATCTTAATTTG
ATCAGCTTCGACTCATTGCAACCCATTCAACTGCTTCAAATCCTCAACGA
TGTTATGACAAATATCAATCCACAGCAAGCTTCAGATGTACGTGACGAGG
ATCCAGAATCTAGAGTAATGAGGATGTTACAATTTTTACGTGTCATGAAA
TATAAACCCAAAACTGATGGTGGTAATGTGAGTGCTTTTCGACAGGGAAT
TGTTCAAGGTGATAAGCCAGTGATATACCCAATTTTACAGTGGTTATTAG
AGCAAGGTGCTGAATTGAAACAAAGGGCATATTTAGCACGTTTTCTGGTT
AAGCTGGACATCCCTGGTGAAGTATTGATTGACAATGAAGTATCTGAAAA
TCATCAACTGtaTTTGAATTTAATCGAAGATTTCAAGGAAGTACACAAAG
AATCAGAGCAGATCAAAGGGTCAGGCATGTCTGCTGCCgaaataaaaaaa
GATATTTTATCAATGGAAGAAGAACAG
Run BLAST on NCBI

transcript from alignment at sc0001449:12745..16569-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036367 ID=TCONS_00036367|Name=TCONS_00036367|organism=Clytia hemisphaerica|type=transcript|length=3825bp|location=Sequence derived from alignment at sc0001449:12745..16569- (Clytia hemisphaerica)
GTGAAACACATATCTGGTCTTATTCTGCACTGTAACTTTCAACCTTTAGT
TTGTATCTGTGGTCCATGTTGGGGTGGTTTATTTATGGCAAAGGAATTTT
CTATCAGAAATATCAGTTTTTCCAGTTCCCTTTGTTAGCTTTGTATTTTT
TTAGCTTTCAGGAATAAACTAAATATAAGTCATGAGTGAACAACTGAAGT
ACATAGTGGATGGGCTCAATGATGTTCCTTATAACAAGAATCTTAATTTG
ATCAGGTAAGTTTGCTGGGAATTCAAAGGACTTTTGTCAGTTCAGTTTCC
TTGTAATGTATTGGATAATCATCAATCTTTTTAATGTATTCACTTTGTTA
CCATTCGAATTTAAATATTGATTATTATGTGGTTGTTCTTATGTTATAAA
TGGGCGATTCTACTCAAACTTGTACATGTCCTTTCCGCAACAGGGTACCA
AAATTCCAAATTTCAAATGGTTTATATAAACCAGCCAATGTAAGTACTTT
AAAGCGAAAAAAAATCATTTAATCATGTTTAAAGATGTAAATGTTTTTCT
TTTCTTCTGTTACAGCTTCGACTCATTGCAACCCATTCAACTGCTTCAAA
TCCTCAACGATGTTATGACAAATATCAATCCACAGGTAGTTTGAGATTTT
AAAATTTGCAATATATTTCATATTCTTTTTATTTTATCCAGAGTGAAAAA
TAAACACCATTCTCAATATATATTTTGGTTGAGACAGGTTGAGATAATCT
GAAAAAAAAGAATCACAATTTGAGATGGAAACTGCAACCCTGGTTACATT
GTGATATCATGAACAGATAATATATTTTTATAATTTAATTACATTTACCT
AACTCGGTGGAGGTCCTATGAATTAACCCATGTTAGTTAGTTAGTTAGTT
AGTGCGTTCGTTACCAGCTTTTCTCGAGATTGGCTCATTAGTTTTTTCTG
ATTTTTTGAACAAAGATGTGTAACTATAAACCCTCGAATGTGACGGAGCC
CGATTTTTGAAAAAAAATATTTTTGGACAAATTTGGGCCAAAAAACGGCT
AAAAACGGGTTTTTTTGGACTTTGTGAAAAATTGGATCATTAACTTTTTC
TGATTTTTTGCTTGAAAGTAGGGTACCATCATAGGTAAAAGATGGGTCAA
GCAGATTTTTTCAAAGAAATTTTGTTGGCTCAAAAAACGCATGTTTATCT
ATAGAATCACTATTAATAAGCATACATCAATGTTCTTAGTTCAATTACAC
ATGAAATTTTGGTTGCTTGGCATGTTTTAATAGAAAAACTGGCCAAATTC
GATATTTATTTGTAAGCACATTATTAATTACTTAGGCATTAGCTTTTCTC
GAGATTGGCTCTTTTGATACATACATCAATGTTCTTAGCCAAATTACTCA
ATTTTTTGATGAGATATATGTTTTTTTGCTCACAAAGTCTTGAATATGAA
AAAGTATTTCAAGAGCATGAAATTTTGGTTTCTAAACGTTTTTTTTATAA
GAAACAAACGACTAATTTTAATAGATCGTCACTATATGTGCTCTGAATGA
TTGTTTAATGGTAACACTCACGTAGATATCAATCATATATATGTGATAAA
TGCATAACCAGGTAGGTCCATAAAAGTATCGCTTGTTTATAATTTAATTA
CATTACAGCAAGCTTCAGATGTACGTGACGAGGATCCAGAATCTAGAGTA
ATGAGGATGTTACAATTTTTACGTGTCATGAAATATAAACCCAAAACTGA
TGGTGGTAATGTGTGAGTAATAATTTCATTTTTTACTAAGATTTCTATGT
TAGACTTATCATGGGCCTTTCATCGGCAGTGATCATGCTCCAAATTTTGT
GTCAATAAAAACTCCCTTAATTAAAACCAACCATTGTTTCCTTGAAAAAT
CAAAAAATTTTGTGTTAACGGATTGTGCAAATTTCAAGGCTGTTGAATAC
TTGCCTAGTAATATTTGTGTAATAAGGTATATATCATCGCATCAAAATAA
AAAAGCTTTAAGTCCATTTTTTGGAAAATTGAATTATGACCATATCGATG
CTTTACACCCCATTTTTTATCAGTTTTTTGGCTTAAATCCATCAAAAAAC
AATCTAGGGTGGCCTAACTTTAAGCTTTTAGAAAAATAGAATTTTACTTT
TCACTTTATTTTCAGGGTAAAAAAGCCTTGTCACACCAGTTTAGGGCAAA
AAGGTCCAGAGTGAAAACAATTTTGGACTAAACTAAAGTCTTTTTTAACA
CAAAATATTTGTTTTAATATATGTTTTTCAGAACTTAAGGAGAAATAATT
TTAAGTTGATTTTCTCAAAACAACAAAAATGGACTTAAAACTTTTTTATT
TTTATGCAACGATATAGTCAACATGACATTATTTTACTTTTAGGAGTGCT
TTTCGACAGGGAATTGTTCAAGGTGATAAGCCAGTGATATACCCAATTTT
ACAGTGGTTATTAGAGCAAGGTGCTGAATTGAAACAAAGGGCATATTTAG
CACGTTTTCTGGTTAAGCTGGACATCCCTGGTGAAGTATTGATTGACAAT
GAAGTATCTGAAAATCATCAACTGGTAAGCTTTATTTTAGTGGATCTATT
GGCCAAAAACATTCAATCATCCAAACAGATTTATTTTATTTGTGATTTAA
AATTGATTTTTCTCTGTTATATAGTATAAAATATTTATTTTTAATTTATT
TCAGTATTTGAATTTAATCGAAGATTTCAAGGAAGTACACAAAGAATCAG
AGCAGATCAAAGGGTCAGGCATGTCTGCTGCCGAAATAAAAAAAGTGAGA
TGACGGGCTTAGTAGGGGCCATTCAAAAAGTACGTTCGTCGCCGAGGGGG
GGAGAGGGTCAGTAAAAAAGCGAACGAAAACGAACGGGGGGAGGGGGTCA
AGTCGATCTGTGTACGTTCGCTTTGGCGGGGGGGGGATGCTTGTCACAAG
CGTGACTTTTAACTTAGTCTATTAAAAATCTTTTTCTATCTATCTCCTAA
TTACATTTTTTCTTTGAATCGATAACCGAAGATAATTGTTAATCCCCTAA
ACAATTGTGTATATTATAATTGTTTAGCAATTATTAGATAATTAGAGAGC
AAAAACTTAAGGTGCGATAAGATTAAAGAATAATTTAGTCTTCCGTCAGA
TACTATCGCCTGATGGATTTAATTTTCAAAATAGGATACAATTAAAGGGA
GAGATACCACTTGCTTACACAGCATTTCTAATCAAAAGAAAGAACAAATT
TTTCCCTTTAATTGCTAAAAAGTACTAATTTTGAGAAATTCTTTTGTTTA
TTCTGCTTTGTCAGTAAAGAGCCTCCTTTGAACTCCTTTTATATCAGATC
ATGATTGCTTTCTGCCAGCAACACTGAAACTTTAAAGGGATAGGTGAGAA
CAAGCAATCTGACAGAATAAGCTCGCTTTTGTAAGGAACGCACATTTTAG
GAAGGACTAGGAACAACAACAAGGTTGCTTGATTGTGTTGAAATGGCTGT
ATTAGAAAAAATCAATTTTCGACATTCCAGGGTGAAACAGATTTCTTTTT
ATAAAACTTACTTTTTCCTATGGTTATGAGTAATTTTCAAGCGCCTCCAG
AAGTTTACTGTACCTGTAAGAAAAATAACGACCATATAATACATACCGTA
GCCGTATTTTTAATCCAAATATTTTTCTAAGGGGTTGTCAGTACAAGTTA
GCAGAAGTCCAATTTCTAGTATCCAAATACTCAAGAAATTGGCTGTACTT
ATATCTAGGGTTGACCAATATTGAACAATGTCTCTAATAATCTTTAAGGA
TATTTTATCAATGGAAGAAGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021411XLOC_021411Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036367-exon-sc0001449-1575043694:16315..16569TCONS_00036367-exon-sc0001449-1575043694:16315..16569Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1575043694:15935..16004TCONS_00036367-exon-sc0001449-1575043694:15935..16004Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1575043694:14808..14911TCONS_00036367-exon-sc0001449-1575043694:14808..14911Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1575043694:13996..14176TCONS_00036367-exon-sc0001449-1575043694:13996..14176Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1575043694:13776..13865TCONS_00036367-exon-sc0001449-1575043694:13776..13865Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1575043694:12745..12771TCONS_00036367-exon-sc0001449-1575043694:12745..12771Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1510915933:16315..16569TCONS_00036367-exon-sc0001449-1510915933:16315..16569Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1510915933:15935..16004TCONS_00036367-exon-sc0001449-1510915933:15935..16004Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1510915933:14808..14911TCONS_00036367-exon-sc0001449-1510915933:14808..14911Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1510915933:13996..14176TCONS_00036367-exon-sc0001449-1510915933:13996..14176Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1510915933:13776..13865TCONS_00036367-exon-sc0001449-1510915933:13776..13865Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1510915933:12745..12771TCONS_00036367-exon-sc0001449-1510915933:12745..12771Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1491911889:16315..16569TCONS_00036367-exon-sc0001449-1491911889:16315..16569Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1491911889:15935..16004TCONS_00036367-exon-sc0001449-1491911889:15935..16004Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1491911889:14808..14911TCONS_00036367-exon-sc0001449-1491911889:14808..14911Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1491911889:13996..14176TCONS_00036367-exon-sc0001449-1491911889:13996..14176Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1491911889:13776..13865TCONS_00036367-exon-sc0001449-1491911889:13776..13865Clytia hemisphaericaexon
TCONS_00036367-exon-sc0001449-1491911889:12745..12771TCONS_00036367-exon-sc0001449-1491911889:12745..12771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001449supercontigsc0001449:12745..16569 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06334	2.50562	1.85571	1.19818	5.60961	1.59235	1.99153	3.32424	0	1.05369	0.811078	0.753996	0	0	0	0.358326	0	0.244462	0	0	0.263346	0	1.29378	0.564986	3.12903	4.69166	0.407322	0	0.230579	0.721812
Blast
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BLAST of TCONS_00036367 vs. Swiss-Prot (Human)
Match: IFT81 (Intraflagellar transport protein 81 homolog OS=Homo sapiens GN=IFT81 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 2.055e-66
Identity = 101/182 (55.49%), Postives = 139/182 (76.37%), Query Frame = 2 
Query:  182 MSEQLKYIVDGLNDVPYNKNLNLISFDSLQPIQLLQILNDVMTNINPQQASDVRDEDPESRVMRMLQFLRVMKYKPKTDGGNVSAFRQGIVQGDKPVIYPILQWLLEQGAELKQRAYLARFLVKLDIPGEVLIDNEVSENHQLYLNLIEDFKEVHKESEQIKGSGMSAAEIKKDILSMEEEQ 727
            MS+Q+K+I+D LN  P+ KN NLI+FDSL+P+QLLQ+L+DV+  I+P+Q  D+R+E PE    RML  L ++KYKP  +  ++S FRQG+V G KPVIYP+L WLL++  ELK+RAYLARFL+KL++P E L D  V++ ++ Y  L+E FK +HKE EQ+K SG S AEI+KDI +MEEE+
Sbjct:    1 MSDQIKFIMDSLNKEPFRKNYNLITFDSLEPMQLLQVLSDVLAEIDPKQLVDIREEMPEQTAKRMLSLLGILKYKPSGNATDMSTFRQGLVIGSKPVIYPVLHWLLQRTNELKKRAYLARFLIKLEVPSEFLQDETVADTNKQYEELMEAFKTLHKEYEQLKISGFSTAEIRKDISAMEEEK 182
The following BLAST results are available for this feature:
BLAST of TCONS_00036367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IFT812.055e-6655.49Intraflagellar transport protein 81 homolog OS=Hom... [more]
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