TCONS_00036360 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036360
Unique NameTCONS_00036360
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length377

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036360 ID=TCONS_00036360|Name=TCONS_00036360|organism=Clytia hemisphaerica|type=transcript|length=377bp
TAAATACACTCTCAATAGAAAAAGAAACTTCATTAATGAAACAAACCAGA
AGAGGAAGATAGAAACTAAAAGACAAGGAATTTAAACGCGAAGCCTTTTT
CTCATAAGAAAAATGCCGTTTCAAGAGATAGAAGAAGAAATGTTTGACAT
CGAGCGCCCTGAAGATATGCCGACACCACCTAAAGTCGTCAAATCAAGAA
GTAATGTCGGTAAAGAAGTACAGTCCAATCGGCCACCAGTTTCGTGCTGT
GAAGAAGAGGACAGAGATGAAGTTGATCGACCAGCCATGTGTTCATGGGT
TCAAAAAGCGAGTGTTGGCAAACAACAAGATGAAGTAAGAATACCGAATA
CCAAATCGCATCAAAGTGGCTTAAaat
Run BLAST on NCBI

transcript from alignment at sc0001449:10167..10745+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036360 ID=TCONS_00036360|Name=TCONS_00036360|organism=Clytia hemisphaerica|type=transcript|length=579bp|location=Sequence derived from alignment at sc0001449:10167..10745+ (Clytia hemisphaerica)
TAAATACACTCTCAATAGAAAAAGAAACTTCATTAATGAAACAAACCAGA
AGAGGAAGATAGAAACTAAAAGACAAGGAATTTAAACGCGAAGCCTTTTT
CTCATAAGAAAAATGCCGTTTCAAGAGATAGAAGAAGAAATGTTTGACAT
CGAGCGCCCTGAAGATATGCCGACACCACCTAAAGTCGTCAAATCAAGAA
GTAATGTCGGTAAAGAAGTACAGTCCAATCGGCCACCAGTTTCGTGCTGT
GAAGAAGAGGACAGAGATGAAGTTGATCGACCAGCCATGTGTTCATGGGT
TCAAAAAGCGAGTGTTGGCAAACAACAAGATGAAGGTAacttttttatcg
ttttttgatgatgtcattcTGTGTGAACATTTGCTTGACTGCATCGCTCG
CCAAGTAATTCATCGAAAAATTTTGCGTCAAATTTAAGAGAATATACCTT
ATATGCATACAACAAACAACGGATATCGACATCATTTCAAAGATATCCTT
CCTGACATACCCTTTTTTATTCCATCTAACTTGCCAGTAAGAATACCGAA
TACCAAATCGCATCAAAGTGGCTTAAaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021408XLOC_021408Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036360-exon-sc0001449-1491911889:10167..10501TCONS_00036360-exon-sc0001449-1491911889:10167..10501Clytia hemisphaericaexon
TCONS_00036360-exon-sc0001449-1510915933:10167..10501TCONS_00036360-exon-sc0001449-1510915933:10167..10501Clytia hemisphaericaexon
TCONS_00036360-exon-sc0001449-1575043694:10167..10501TCONS_00036360-exon-sc0001449-1575043694:10167..10501Clytia hemisphaericaexon
TCONS_00036360-exon-sc0001449-1491911889:10704..10745TCONS_00036360-exon-sc0001449-1491911889:10704..10745Clytia hemisphaericaexon
TCONS_00036360-exon-sc0001449-1510915933:10704..10745TCONS_00036360-exon-sc0001449-1510915933:10704..10745Clytia hemisphaericaexon
TCONS_00036360-exon-sc0001449-1575043694:10704..10745TCONS_00036360-exon-sc0001449-1575043694:10704..10745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001449supercontigsc0001449:10167..10745 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.318071	1.17304	0.55942	0.0183277	0	0	0.775112	0.447847	3.36859	0.130277	0	3.60574	2.77129	6.72343	3.73497	0.690072	0.380053	2.27689	8.58187	0	0	0	0	0.46132	0.102178	0.47798	0.984199	0.136921	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036360 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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