TCONS_00036358 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036358
Unique NameTCONS_00036358
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036358 ID=TCONS_00036358|Name=TCONS_00036358|organism=Clytia hemisphaerica|type=transcript|length=551bp
NAAAGTGATGAAACTTGGGCTGTGCTATTGCAGCGCTTCATTCAATCAGA
TATCAAATGGGAAACAAtcctttctcaaaatttgttgaatttcattCGTG
TTAAATCGACTGCCGTTGGAACAAATGTGTCATATTTCTTCTTGTCCTTC
TTGACGACTATTTCATACATGTGCTCTGTCAAAAAATCTTGTATTGAACT
ATCAGAAACTCATAggatcaattttaatttattttcgatATTTGTTGGTC
CACCGACCTCTGCCAAATCTCCAGCGTTCAAATACGCAGTGAATGATGCC
CTGAAAAACATACCTGATTTGAACTTGTTTACTTCGTCAACACGCTCGAC
TCACAAAGAAATTGGCAGTGCACAAGCAAGGATTTATCATTAACTCAGAA
ATAAGCAGCTATCTTCTCAAAATGCACAAGAATGATGATGATAATTCCGA
TGGAAACGCGCAAGTCTTGTGCAAATTATTTTCTGAAGAAACGCATGAAG
TGGCATACGCTCGATCATCAACAGAATAATATTCGTTAAAATGCTTGCCC
A
Run BLAST on NCBI

protein sequence of TCONS_00036358-protein

>TCONS_00036358-protein ID=TCONS_00036358-protein|Name=TCONS_00036358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
XSDETWAVLLQRFIQSDIKWETILSQNLLNFIRVKSTAVGTNVSYFFLSF
LTTISYMCSVKKSCIELSETHRINFNLFSIFVGPPTSAKSPAFKYAVNDA
LKNIPDLNLFTSSTRSTHKEIGSAQARIYH
Run BLAST on NCBI

transcript from alignment at sc0001448:54676..55226

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036358 ID=TCONS_00036358|Name=TCONS_00036358|organism=Clytia hemisphaerica|type=transcript|length=551bp|location=Sequence derived from alignment at sc0001448:54676..55226 (Clytia hemisphaerica)
TGGGCAAGCATTTTAACGAATATTATTCTGTTGATGATCGAGCGTATGCC
ACTTCATGCGTTTCTTCAGAAAATAATTTGCACAAGACTTGCGCGTTTCC
ATCGGAATTATCATCATCATTCTTGTGCATTTTGAGAAGATAGCTGCTTA
TTTCTGAGTTAATGATAAATCCTTGCTTGTGCACTGCCAATTTCTTTGTG
AGTCGAGCGTGTTGACGAAGTAAACAAGTTCAAATCAGGTATGTTTTTCA
GGGCATCATTCACTGCGTATTTGAACGCTGGAGATTTGGCAGAGGTCGGT
GGACCAACAAATatcgaaaataaattaaaattgatccTATGAGTTTCTGA
TAGTTCAATACAAGATTTTTTGACAGAGCACATGTATGAAATAGTCGTCA
AGAAGGACAAGAAGAAATATGACACATTTGTTCCAACGGCAGTCGATTTA
ACACGaatgaaattcaacaaattttgagaaaggaTTGTTTCCCATTTGAT
ATCTGATTGAATGAAGCGCTGCAATAGCACAGCCCAAGTTTCATCACTTT
N

Coding sequence (CDS) from alignment at sc0001448:54676..55226

>TCONS_00036358 ID=TCONS_00036358|Name=TCONS_00036358|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0001448:54676..55226 (Clytia hemisphaerica)
TTAATGATAAATCCTTGCTTGTGCACTGCCAATTTCTTTGTGAGTCGAGC
GTGTTGACGAAGTAAACAAGTTCAAATCAGGTATGTTTTTCAGGGCATCA
TTCACTGCGTATTTGAACGCTGGAGATTTGGCAGAGGTCGGTGGACCAAC
AAATatcgaaaataaattaaaattgatccTATGAGTTTCTGATAGTTCAA
TACAAGATTTTTTGACAGAGCACATGTATGAAATAGTCGTCAAGAAGGAC
AAGAAGAAATATGACACATTTGTTCCAACGGCAGTCGATTTAACACGaat
gaaattcaacaaattttgagaaaggaTTGTTTCCCATTTGATATCTGATT
GAATGAAGCGCTGCAATAGCACAGCCCAAGTTTCATCACTTTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021406XLOC_021406Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036358-exon-sc0001448-1491911889:54676..55226TCONS_00036358-exon-sc0001448-1491911889:54676..55226Clytia hemisphaericaexon
TCONS_00036358-exon-sc0001448-1510915933:54676..55226TCONS_00036358-exon-sc0001448-1510915933:54676..55226Clytia hemisphaericaexon
TCONS_00036358-exon-sc0001448-1575043694:54676..55226TCONS_00036358-exon-sc0001448-1575043694:54676..55226Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036358-proteinTCONS_00036358-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001448supercontigsc0001448:54676..55226 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.207472	0.129528	0	0.114912	0.139894	0	0.400107	0	0.0874164	0.108279	0	0.0690877	0.206975	0	0.235619	0.189642	0.54512	0.239456	0.110274	0	0	0.146765	0.356825	0.216271	14.3205	7.06101	0.142243	0.151805	0	0.117308
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036358 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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