TCONS_00036357 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036357
Unique NameTCONS_00036357
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036357 ID=TCONS_00036357|Name=TCONS_00036357|organism=Clytia hemisphaerica|type=transcript|length=547bp
GTGGTATAGTAGGAACTTCGATATAGGGTTAGGGGGctatttctgacaaa
atttgacattgtaaagcattattcgaatttaagaaatgagaattaggttg
cagttaaaaaaattgttttcgtaTAAAAAAGGATGAACCAACTAACAAAA
GAAGTCGGACAATTACTTCTTCAATTACTTTCTCCGATCTTCCGTTCAAA
CGATCTGTATTTNGTTGCggttaaaaatattgttttcgtATAAAAAAGGA
TGAACCAACTAACAAAAGAAGTCGGACAATTACTTATTCAATTACTTTCT
CCGATTTTCCGTTCAAACGAACTGTATTTCCCCCTCATTGAAGATGTTTC
TTTGGTTGTGTTGTCGAACAATCATATTTACTTCCTTTCTTATAACCATA
TTTATATCTTTGTCTTCTGATGAGACGATGTTCATTCTGTGATAAGTTTT
CTCCACACGTCTTTAACATTGCAGCGAATTGATGTTTCGGCTCTCTCCGC
TGGGCTCGCAATACGTTTTTCGATTTTCTGTcgagagaaaatgataa
Run BLAST on NCBI

transcript from alignment at sc0001448:30752..31298

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036357 ID=TCONS_00036357|Name=TCONS_00036357|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at sc0001448:30752..31298 (Clytia hemisphaerica)
ttatcattttctctcgACAGAAAATCGAAAAACGTATTGCGAGCCCAGCG
GAGAGAGCCGAAACATCAATTCGCTGCAATGTTAAAGACGTGTGGAGAAA
ACTTATCACAGAATGAACATCGTCTCATCAGAAGACAAAGATATAAATAT
GGTTATAAGAAAGGAAGTAAATATGATTGTTCGACAACACAACCAAAGAA
ACATCTTCAATGAGGGGGAAATACAGTTCGTTTGAACGGAAAATCGGAGA
AAGTAATTGAATAAGTAATTGTCCGACTTCTTTTGTTAGTTGGTTCATCC
TTTTTTATacgaaaacaatatttttaaccGCAACNAAATACAGATCGTTT
GAACGGAAGATCGGAGAAAGTAATTGAAGAAGTAATTGTCCGACTTCTTT
TGTTAGTTGGTTCATCCTTTTTTAtacgaaaacaatttttttaactgcaa
cctaattctcatttcttaaattcgaataatgctttacaatgtcaaatttt
gtcagaaatagCCCCCTAACCCTATATCGAAGTTCCTACTATACCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021405XLOC_021405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036357-exon-sc0001448-1491911889:30752..31298TCONS_00036357-exon-sc0001448-1491911889:30752..31298Clytia hemisphaericaexon
TCONS_00036357-exon-sc0001448-1510915933:30752..31298TCONS_00036357-exon-sc0001448-1510915933:30752..31298Clytia hemisphaericaexon
TCONS_00036357-exon-sc0001448-1575043694:30752..31298TCONS_00036357-exon-sc0001448-1575043694:30752..31298Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001448supercontigsc0001448:30752..31298 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.118845	0	9.895	6.88297	1.55259	1.71988	0.819547	0.193675	0	0.93735	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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