TCONS_00036356 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036356
Unique NameTCONS_00036356
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length665

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036356 ID=TCONS_00036356|Name=TCONS_00036356|organism=Clytia hemisphaerica|type=transcript|length=665bp
CTATccgtaaaatttctgaaaagacgGATCCATAAAAAATGCACGATGGG
ATGTTACTGTCGGCATGTGGCATCCTTACAATGAAAAAGGGAAAGGCATC
CCTTATATctaaaaacattgttttcaacggtgatatctaaatctaaaaac
GATGCATGGTTTCCATGGTGCTCAACTTTGAGATCTAATTCTTTAGGGTA
CATCTGTTTGTAGCAATTATGAAACTCATCTCTGTCATTTAAGGCACGCA
AATCATCAATAAATCTACCTACAGAGTGGAAGTTATAGGCACTAGGCGAA
CTAGCAGAAATGAGACCTTTGACATACTCAGATTCAAAATGGTACAAAAA
CAGATTTGCCCAAAAAGGAGCAGTATCTATTCCCATGGGAATTCCAATGC
ACTGTTTAAGAATAAAATTGccaactttgaaaaagcaattttttatcaga
aaggACACACACTCAGACAGTGAAGTACTAGTAAAGAAACTATCATCCTT
CCCTTTTGTAGTCCAGTATgctgaaatatttgaaaaaccatcccaaagcc
ggagaccaaaacaaattatcttccaagattatggcgcccttttggatcta
ttgttaaggccatctaaaatggtggaaagagttgcggaaagacaaaggcg
ccCGCTGCTTTGAGG
Run BLAST on NCBI

protein sequence of TCONS_00036356-protein

>TCONS_00036356-protein ID=TCONS_00036356-protein|Name=TCONS_00036356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MGIDTAPFWANLFLYHFESEYVKGLISASSPSAYNFHSVGRFIDDLRALN
DRDEFHNCYKQMYPKELDLKVEHHGNHASFLDLDITVENNVFRYKGCLSL
FHCKDATCRQ
Run BLAST on NCBI

transcript from alignment at sc0001448:25302..25966

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036356 ID=TCONS_00036356|Name=TCONS_00036356|organism=Clytia hemisphaerica|type=transcript|length=665bp|location=Sequence derived from alignment at sc0001448:25302..25966 (Clytia hemisphaerica)
CCTCAAAGCAGCGggcgcctttgtctttccgcaactctttccaccatttt
agatggccttaacaatagatccaaaagggcgccataatcttggaagataa
tttgttttggtctccggctttgggatggtttttcaaatatttcagcATAC
TGGACTACAAAAGGGAAGGATGATAGTTTCTTTACTAGTACTTCACTGTC
TGAGTGTGTGTcctttctgataaaaaattgctttttcaaagttggCAATT
TTATTCTTAAACAGTGCATTGGAATTCCCATGGGAATAGATACTGCTCCT
TTTTGGGCAAATCTGTTTTTGTACCATTTTGAATCTGAGTATGTCAAAGG
TCTCATTTCTGCTAGTTCGCCTAGTGCCTATAACTTCCACTCTGTAGGTA
GATTTATTGATGATTTGCGTGCCTTAAATGACAGAGATGAGTTTCATAAT
TGCTACAAACAGATGTACCCTAAAGAATTAGATCTCAAAGTTGAGCACCA
TGGAAACCATGCATCgtttttagatttagatatcaccgttgaaaacaatg
tttttagATATAAGGGATGCCTTTCCCTTTTTCATTGTAAGGATGCCACA
TGCCGACAGTAACATCCCATCGTGCATTTTTTATGGATCcgtcttttcag
aaattttacggATAG

Coding sequence (CDS) from alignment at sc0001448:25302..25966

>TCONS_00036356 ID=TCONS_00036356|Name=TCONS_00036356|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0001448:25302..25966 (Clytia hemisphaerica)
ATGGGAATAGATACTGCTCCTTTTTGGGCAAATCTGTTTTTGTACCATTT
TGAATCTGAGTATGTCAAAGGTCTCATTTCTGCTAGTTCGCCTAGTGCCT
ATAACTTCCACTCTGTAGGTAGATTTATTGATGATTTGCGTGCCTTAAAT
GACAGAGATGAGTTTCATAATTGCTACAAACAGATGTACCCTAAAGAATT
AGATCTCAAAGTTGAGCACCATGGAAACCATGCATCgtttttagatttag
atatcaccgttgaaaacaatgtttttagATATAAGGGATGCCTTTCCCTT
TTTCATTGTAAGGATGCCACATGCCGACAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021404XLOC_021404Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036356-proteinTCONS_00036356-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036356-exon-sc0001448-1491911889:25302..25966TCONS_00036356-exon-sc0001448-1491911889:25302..25966Clytia hemisphaericaexon
TCONS_00036356-exon-sc0001448-1510915933:25302..25966TCONS_00036356-exon-sc0001448-1510915933:25302..25966Clytia hemisphaericaexon
TCONS_00036356-exon-sc0001448-1575043694:25302..25966TCONS_00036356-exon-sc0001448-1575043694:25302..25966Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001448supercontigsc0001448:25302..25966 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.13141	5.53335	10.0514	9.95792	4.02699	3.58339	3.96241	2.78033	3.35905	2.68556	3.80961	4.75534	3.58833	3.12868	3.62299	3.97897	4.11918	4.03745	1.77485	5.60919	6.49886	6.74531	2.24548	3.6837	2.65498	4.11595	6.08167	2.85224	3.9565	5.11796
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036356 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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