TCONS_00036355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036355
Unique NameTCONS_00036355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036355 ID=TCONS_00036355|Name=TCONS_00036355|organism=Clytia hemisphaerica|type=transcript|length=539bp
GTCAATTTATTCgtttttgattcttttaaatTGCTTTAACCGTTTTATCT
TTTGTTTTAGTAATAGTATTAATTAAACCAAAAGAAAAATGGCTggtttt
tttaccaaaaaaatacgTCTGATGGATGTGAGCACCCAGACGGAGAACGT
ATACGGTCTTCAGCCCCTGGAGGCAAAGATCGACCAGCTTCAGTCCAAAA
TAAGCTCCACATTTTCCAGGTTGTCTTTTAATAAcgggcaaaaatcataa
attccTAAAAGTCTGCCATGATGGATGGATCTATTGACTTGGGAATTGGT
TATCTTTTTAAGATCAAAGCCTTATATTGGAAAAAGAATGATTTTATTAT
GACTTTGGAGCAATTAATATCATTTCATCTTTCAGTAACAACTGTCGTCA
TCAAGATCGACGAACAAACGGACACGCTAGAGGCAATAGAAAGGCAGCAG
CGGGAAAAAATTAATGGTGAGCTCTTTTTGTTGCATATACCTCCTCTTTA
AGCATTCTTAAAACCAGTACTGGTCTGGTTTTGGTTTTC
Run BLAST on NCBI

transcript from alignment at sc0001448:7785..8323

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036355 ID=TCONS_00036355|Name=TCONS_00036355|organism=Clytia hemisphaerica|type=transcript|length=539bp|location=Sequence derived from alignment at sc0001448:7785..8323 (Clytia hemisphaerica)
GAAAACCAAAACCAGACCAGTACTGGTTTTAAGAATGCTTAAAGAGGAGG
TATATGCAACAAAAAGAGCTCACCATTAATTTTTTCCCGCTGCTGCCTTT
CTATTGCCTCTAGCGTGTCCGTTTGTTCGTCGATCTTGATGACGACAGTT
GTTACTGAAAGATGAAATGATATTAATTGCTCCAAAGTCATAATAAAATC
ATTCTTTTTCCAATATAAGGCTTTGATCTTAAAAAGATAACCAATTCCCA
AGTCAATAGATCCATCCATCATGGCAGACTTTTAggaatttatgattttt
gcccgTTATTAAAAGACAACCTGGAAAATGTGGAGCTTATTTTGGACTGA
AGCTGGTCGATCTTTGCCTCCAGGGGCTGAAGACCGTATACGTTCTCCGT
CTGGGTGCTCACATCCATCAGAcgtatttttttggtaaaaaaaccAGCCA
TTTTTCTTTTGGTTTAATTAATACTATTACTAAAACAAAAGATAAAACGG
TTAAAGCAatttaaaagaatcaaaaacGAATAAATTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021403XLOC_021403Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036355-exon-sc0001448-1491911889:7785..8323TCONS_00036355-exon-sc0001448-1491911889:7785..8323Clytia hemisphaericaexon
TCONS_00036355-exon-sc0001448-1510915933:7785..8323TCONS_00036355-exon-sc0001448-1510915933:7785..8323Clytia hemisphaericaexon
TCONS_00036355-exon-sc0001448-1575043694:7785..8323TCONS_00036355-exon-sc0001448-1575043694:7785..8323Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001448supercontigsc0001448:7785..8323 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.180128	0.0472507	0.20395	0	0.96815	0	0.626944	0.258798	0.362381	0.448867	0	0.177098	0.53179	0.730398	1.18755	0.789203	0.483321	0.579048	0.278922	0.826196	0.71493	0.403034	0.123267	0.46786	0.577135	1.01921	0.0207076	1.2586	0.357978	0.243148
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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