TCONS_00036353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036353
Unique NameTCONS_00036353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036353 ID=TCONS_00036353|Name=TCONS_00036353|organism=Clytia hemisphaerica|type=transcript|length=357bp
TTTGGCAAACCAGCTTTATTGTGAAAATAGGCATCAAAAGACTGCAATGA
GGCTACAAAAAGACATGCTTTCATGGAGATGCCCAACTTGTACAAATAAA
ATATCAATGAAGTCAAAATCGTTCTTCTCTGAAACAAGAACGGATATGGT
CTTAtggattaaaattttgaatgagtGGCGTAAAGAATCGACAATCAGGG
AAATTGCAACAAGGTTTAACCTATCTATTGGTACAACTAGTGGTCATTGC
AAACATTTCAGAGAGTTGTGCCAATCTTGGTTTACAGATATTCAACCCCA
ATTATTGGGTGGTGAGGGACAACAAGTGCTCGTCAAAATCATCAAGaaaT
GCACAAA
Run BLAST on NCBI

protein sequence of TCONS_00036353-protein

>TCONS_00036353-protein ID=TCONS_00036353-protein|Name=TCONS_00036353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
LANQLYCENRHQKTAMRLQKDMLSWRCPTCTNKISMKSKSFFSETRTDMV
LWIKILNEWRKESTIREIATRFNLSIGTTSGHCKHFRELCQSWFTDIQPQ
LLGGEGQQVLVKIIKKCT
Run BLAST on NCBI

transcript from alignment at sc0001448:56334..57632-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036353 ID=TCONS_00036353|Name=TCONS_00036353|organism=Clytia hemisphaerica|type=transcript|length=1299bp|location=Sequence derived from alignment at sc0001448:56334..57632- (Clytia hemisphaerica)
TTTGGCAAACCAGCTTTATTGTGAAAATAGGCATCAAAAGACTGCAATGA
GGCTACAAAAAGACATGCTTTCATGGTAAGATTAAATTTAAAATTTCACT
CGTTACTATTTCAATCTGATTCAATACAGGGAGTGGCACTGTGTGAGATT
GCAGAAACCGCCTAAAAGTTGGATTTTAAAATAGCACCCTTATAGTGCAG
CGAAATAAGCTATTTTTTTCACAATAGTTATATGTTAATTTGAGTTTTTA
TGCAAAATATAAAGATTTTCCAAGAAATGTTTAGCTTACAGTGCAACTTA
AAACTGTTCATCCTTTGCAGTGAATTGTATACATCTTTGAAGGAAAATAT
ACCCTTCTTATGAGAAAATTTGAATTTTTTCAAATCAGTTACTTAATTAA
ATTCAGGAGATGCCCAACTTGTACAAATAAAATATCAATGAAGTCAAAAT
CGTTCTTCTCTGAAACAAGAACGGATATGGTCTTATGGATTAAAATTTTG
AATGAGTGGCGTAAAGAATCGACAATCAGGGTAAGAACCTTTAAAAACTT
TTTGTCGATTTTAGATTCGATAAAATTAAAGTTGTGAAAACCACTTCCAT
TAGGGTAAGAGGATATCTTTTGCGTTGACATTTTTCCGCCTTGATCAAGT
GGAAAAGTCTAATTTACGTGACTTCCGTCATTGAGCTGTAAATAAATCTT
TTATATGAAAACGAAAAATCGAGAAAATTAGTTCCCGCTAAATGCAATTT
TAAAATACAAAAATTGGAAACCCGTACTCTTTTGTCCCCAAGTGTGCCTA
ATGAGCGTGGGGGGTGGATGTTCTTAGAAAAAATCCACAAAATGTGGGGG
GGGGTCGTAATAAAGTGATATTGGGGGTGAAAAATCAGAAAAATTGCAAA
GTGACCCCCTACAATTAGGGACAAAAGAGTAGGAAAGAATTTCGTCAAAA
ATTGGGTTTCAACCGCGAAAATTTTAGTTTCGCGAAATTCGATCATTTCG
GACGCTCTTTCCTCTTACCTCTTTTAAGGTAATTTTTATTCTCTTTCTCA
AAGGAAATTGCAACAAGGTTTAACCTATCTATTGGTACAACTAGTGGTCA
TTGCAAACATTTCAGAGAGTTGTGCCAATCTTGGTTTACAGATATTCAAC
CCCAATTATTGGGTGGTGAGGGACAACAAGTGCTCGTCAAAATCATCAAG
GTATTTACATAACGACTGGATATCTTTCTACATTTTTCATTAGATACATA
TGTGCAATAAGGTTAATATAACGTTTTTCTATTTTCAGAAATGCACAAA

Coding sequence (CDS) from alignment at sc0001448:56334..57632-

>TCONS_00036353 ID=TCONS_00036353|Name=TCONS_00036353|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at sc0001448:56334..57632- (Clytia hemisphaerica)
AAATGCACAGAAATTGCAACAAGGTTTAACCTATCTATTGGTACAACTAG
TGGTCATTGCAAACATTTCAGAGAGTTGTGCCAATCTTGGTTTACAGATA
TTCAACCCCAATTATTGGGTGGTGAGGGACAACAAGTGCTCGTCAAAATC
ATCAAGGAGATGCCCAACTTGTACAAATAAAATATCAATGAAGTCAAAAT
CGTTCTTCTCTGAAACAAGAACGGATATGGTCTTATGGATTAAAATTTTG
AATGAGTGGCGTAAAGAATCGACAATCAGGTTGGCAAACCAGCTTTATTG
TGAAAATAGGCATCAAAAGACTGCAATGAGGCTACAAAAAGACATGCTTT
CATGAAATGCACAGAAATTGCAACAAGGTTTAACCTATCTATTGGTACAA
CTAGTGGTCATTGCAAACATTTCAGAGAGTTGTGCCAATCTTGGTTTACA
GATATTCAACCCCAATTATTGGGTGGTGAGGGACAACAAGTGCTCGTCAA
AATCATCAAGGAGATGCCCAACTTGTACAAATAAAATATCAATGAAGTCA
AAATCGTTCTTCTCTGAAACAAGAACGGATATGGTCTTATGGATTAAAAT
TTTGAATGAGTGGCGTAAAGAATCGACAATCAGGTTGGCAAACCAGCTTT
ATTGTGAAAATAGGCATCAAAAGACTGCAATGAGGCTACAAAAAGACATG
CTTTCATGAAATGCACAGAAATTGCAACAAGGTTTAACCTATCTATTGGT
ACAACTAGTGGTCATTGCAAACATTTCAGAGAGTTGTGCCAATCTTGGTT
TACAGATATTCAACCCCAATTATTGGGTGGTGAGGGACAACAAGTGCTCG
TCAAAATCATCAAGGAGATGCCCAACTTGTACAAATAAAATATCAATGAA
GTCAAAATCGTTCTTCTCTGAAACAAGAACGGATATGGTCTTATGGATTA
AAATTTTGAATGAGTGGCGTAAAGAATCGACAATCAGGTTGGCAAACCAG
CTTTATTGTGAAAATAGGCATCAAAAGACTGCAATGAGGCTACAAAAAGA
CATGCTTTCATGAAATGCACAGAAATTGCAACAAGGTTTAACCTATCTAT
TGGTACAACTAGTGGTCATTGCAAACATTTCAGAGAGTTGTGCCAATCTT
GGTTTACAGATATTCAACCCCAATTATTGGGTGGTGAGGGACAACAAGTG
CTCGTCAAAATCATCAAGGAGATGCCCAACTTGTACAAATAAAATATCAA
TGAAGTCAAAATCGTTCTTCTCTGAAACAAGAACGGATATGGTCTTATGG
ATTAAAATTTTGAATGAGTGGCGTAAAGAATCGACAATCAGGTTGGCAAA
CCAGCTTTATTGTGAAAATAGGCATCAAAAGACTGCAATGAGGCTACAAA
AAGACATGCTTTCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021402XLOC_021402Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036353-exon-sc0001448-1575043694:57558..57632TCONS_00036353-exon-sc0001448-1575043694:57558..57632Clytia hemisphaericaexon
TCONS_00036353-exon-sc0001448-1575043694:57103..57226TCONS_00036353-exon-sc0001448-1575043694:57103..57226Clytia hemisphaericaexon
TCONS_00036353-exon-sc0001448-1575043694:56433..56579TCONS_00036353-exon-sc0001448-1575043694:56433..56579Clytia hemisphaericaexon
TCONS_00036353-exon-sc0001448-1575043694:56334..56344TCONS_00036353-exon-sc0001448-1575043694:56334..56344Clytia hemisphaericaexon
TCONS_00036353-exon-sc0001448-1510915933:57558..57632TCONS_00036353-exon-sc0001448-1510915933:57558..57632Clytia hemisphaericaexon
TCONS_00036353-exon-sc0001448-1510915933:57103..57226TCONS_00036353-exon-sc0001448-1510915933:57103..57226Clytia hemisphaericaexon
TCONS_00036353-exon-sc0001448-1510915933:56433..56579TCONS_00036353-exon-sc0001448-1510915933:56433..56579Clytia hemisphaericaexon
TCONS_00036353-exon-sc0001448-1510915933:56334..56344TCONS_00036353-exon-sc0001448-1510915933:56334..56344Clytia hemisphaericaexon
TCONS_00036353-exon-sc0001448-1491911889:57558..57632TCONS_00036353-exon-sc0001448-1491911889:57558..57632Clytia hemisphaericaexon
TCONS_00036353-exon-sc0001448-1491911889:57103..57226TCONS_00036353-exon-sc0001448-1491911889:57103..57226Clytia hemisphaericaexon
TCONS_00036353-exon-sc0001448-1491911889:56433..56579TCONS_00036353-exon-sc0001448-1491911889:56433..56579Clytia hemisphaericaexon
TCONS_00036353-exon-sc0001448-1491911889:56334..56344TCONS_00036353-exon-sc0001448-1491911889:56334..56344Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036353-proteinTCONS_00036353-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001448supercontigsc0001448:56334..57632 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.271417	0	0.323268	0	0	0.394262	0.202003	0	0	0	0	0	0	0	0.539858	0	0	0	0	0	0	0	14.3426	9.13203	0	0.350793	0.266064	0.271077
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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