TCONS_00036352 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036352
Unique NameTCONS_00036352
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036352 ID=TCONS_00036352|Name=TCONS_00036352|organism=Clytia hemisphaerica|type=transcript|length=752bp
CAGGGGATGAGTTATAATAGGAGACGTGTATTAGTTACCGAGAGGTAAAT
GGCCCCTAAATGCGGGTTTAACCTTCTTAAGGTATCTTGAAAACCAAAAC
CAGACCAGTACTGGTTTTAAGAATGCTTAAAGAGGAGGTATATGCATCAA
AAAGAGCTCaccattaatttttttccgCTGCTGCCTTTCTATTGCCTCTA
GCGTTTCCGTTTTTTCGTCGATCTTGATGACGACAGTTGTTACTGAAAGA
TGAAATAATATTAATTGCTCCAAAGTCATAATAAAATCCTTCTTTTTCCA
ATATAAGGCTTTGATCTTAAAAAGATAACCAATTCCCAAGTCAATAGATC
CATCCATCATGGCAGACTTTTAGGAATTAATGATTTTTGCCCGTTATTAA
AAGACAACCTGAAAAATGTGGAGCTTATTTTGGACTGAAGCTGGTCGATC
TTTGCCTCCAGGGGCTGAAGACCGTATACGTTCTCCGTCTGGGTGCTCAC
ATCCATCAGGcgtatttttttggtaaaaaaaccagcaatttttcttttgg
ttttaaTAATACTATTACTAAAACAAAAGATAAAACGGTTAAAGCAattt
aaaagaatcaaaaacGAATAAATTGACCACAGAAACTTAAATAACATTTA
AGTTGAATCAATCAAGTAAGGGTTATGGTTTCAGAAGGTCATGTGATATC
ACCATCATTAACCAACTATCATCATTAACCGACCCTTACGAGGGATTATC
TT
Run BLAST on NCBI

transcript from alignment at sc0001448:3980..9025+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036352 ID=TCONS_00036352|Name=TCONS_00036352|organism=Clytia hemisphaerica|type=transcript|length=5046bp|location=Sequence derived from alignment at sc0001448:3980..9025+ (Clytia hemisphaerica)
CAGGGGATGAGTTATAATAGGAGACGTGTATTAGTTACCGAGAGGTAAAT
GGCCCCTAAATGCGGGTTTAACCTTCTTAAGGTATCTTGAAAACCAAAAC
CAGACCAGTACTGGTTTTAAGAATGCTTAAAGAGGAGGTATATGCATCAA
AAAGAGCTCaccattaatttttttccgCTGCTGCCTTTCTATTGCCTCTA
GCGTTTCCGTTTTTTCGTCGATCTTGATGACGACAGTTGTTACTGAAAGA
TGAAATAATATTAATTGCTCCAAAGTCATAATAAAATCCTTCTTTTTCCA
ATATAAGGCTTTGATCTTAAAAAGATAACCAATTCCCAAGTCAATAGATC
CATCCATCATGGCAGACTTTTAGGAATTAATGATTTTTGCCCGTTATTAA
AAGACAACCTGAAAAATGTGGAGCTTATTTTGGACTGAAGCTGGTCGATC
TTTGCCTCCAGGGGCTGAAGACCGTATACGTTCTCCGTCTGGGTGCTCAC
ATCCATCAGGcgtatttttttggtaaaaaaaccagcaatttttcttttgg
ttttaaTAATACTATTACTAAAACAAAAGATAAAACGGTTAAAGCAattt
aaaagaatcaaaaacGAATAAATTGACCACAGAAACTTAAATAACATTTA
AGTTGAATCAATCAAGTAAGGGTTATGGTTTCAGAAGGTCATGTGATATC
TATCATCATTAACCGACCCTTACGAGGGATTATCATCTTTTAAAAACAAT
CAAGAATATAAACTTTAGTACGACTTTAAccattttgtttacaaatttca
atAGGGGAATGTTAATCTCCACAGCGTGGGGTCTCCGATGTATCGGGTAT
CATGTCCAATTCAAAATGAATGTCAACCTCCACAGCGTGGAGTCTCCGAT
GTATCGGGTATCATGTCCAATTCAAAAGGGGTGGCGATCTCCACAGCGTG
GGGTCTCCGATGAATGGGGTATTTATTAGACCATAAATCTCTAGTGTGGA
GTTTTGAATCGAGTCAACATTTAATAATGATATAATATTAGAGTATAGAA
CAGCTTGTAAAGATGAATTCTAAAAGATGATAATCCCTCTTTCTTAAAAT
CCAAACTATCAGGAAATAATTAACAGCCAttttattcttttgaaaaaatc
aataatGGCTTTTTTAACTTAAGAAAACTCAGGACATAGCAAATCACTAT
AGTATAAATCTCCCACCCCCAGCCTTGAAAAGTATAAAAACATAACAATA
AGAAATTGTAAATTCAATCAAAGATAACCCAACACAACGATAATCTTGAA
CACTAGTCAACANCCCCCCCCCCCAgccttgaaaaatataaaaacataac
aatAAGAAATTGTAAATTCAATCAGAGATAACCCAACCCAACTGAACAGA
ACACAACGATAATCTTGAACACTAttcaacattttcataatttttgtaaa
ttctttttgaaactttgaaattattggAAGTTATTCGAAAtatcaacaac
aaaacaaaaagcacGACCTTAGAACAGCAAATCTAAAGATCATTAATTTA
ATCACTTTCTTCAATAAAACATCGGAGGCCATCATTGACAAAGCGATCGA
ATTCACATAATAATTCTTTGTAAATATTCAAATCACTGTAACGACCAAAG
GTTTTAAGTGTCTCATCACTCAAagctttcaatcttttttcttcCTCCCT
TCTTTGAGGCATCCATGGATGTTTATTGATGTACTCTAATCGATCAAAGG
GAATTTTGTTTACTAGAGCAACATTTTCTAATTTGGATGCTCTACTAAGG
GCAGTATAAGTAATGCCAAGGTTAAGCTTTTCCATGAAAATCTCTTGATT
GAGTTTTATCCTTATAGGAGTACATTGCTCATTTGGGCCTATGGTCATAC
CTTGACTTTTTGAGATTGGAATACAATAACCAGGCATCAACGGCACACCG
CGCTTCATTGACAGGTATAGGAACCCATGTGGGGTGTTCTGGAATCCAAC
TTGGGCCTTTATATCGTGGGAAATCAACAACAACAGCTTCAGGAAATGAT
GGAGGTCCCTCACCCTCAGCATACAAAATTGCAACCACTTTCCCAATGGC
TCCATTATTCAAACCTAGAGGTGTTAGACTGAGTTGATTCTTTGTCAAAA
GTACTCGACTTCCAACAGCAATGTACGAAATTGCAGGTATTTGGCCCATC
TGATTAACAGATTGAGTGTGGTGGCGACCCTTTCCTTTGCTGGGTATAGT
ACCGACAGGGACTTgtaaatcaaaaagtttgttgtgATTTTCAACATTGA
CTTCCTGCCATGTTTCCATGACAGTTAGAAATGTATCTGCTTTAAAACCT
TCTCTCACACTCTCAGGAAGATCTCCTTCATACCTAGAATTAATTGTCTT
CCAATCGTCCAGATTCAGTTTACCTTCTCTAATTCTCAATAACAtttcca
aaaaagaaatttgatctGGCCCTTGTCGCATTGTCGATAGATTGCATAAC
CTGCAAGCTTATCAGGAGAATCTGTAGATAATGGCTCAATGTGTAAATCT
TTTGCATCAACAGGCCCTAATTGACCCAAATCtccaaaaaaattcacagc
TGGTATTGCACCAAAGTTGTTGGAAAAATCACACGTGGCCTCTCTAAAAC
GTTGACTACACCATGCTAAGACACGGTGACTATACATATCTTTCATCTAA
ATTCAAAGTCATCAATTTCATAGAATTACCTTCCAGAGTGCTACCAGTTA
GATTACGTAGGgcagtactcttaggtgccaaataaacggtcccccccact
tgttaatttttcgaaaattttccaacttccccggaccttattaggacccc
ccccgtttattaattttaaagaaattttccgTTGGCTtaaagaagtcccc
ttattttgctccaaaaagcctgattttaggctatatttaccttattttgg
gattttcataagtacaatttccaacccccccggcaattaggtcccccccg
tttattgaaatttcaaaaaatttccaacccccccgtttattccaaccccc
cccccccgtttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
ATCTTGAAAACCAAAACCAGACCAGTACTGGTTTTAAGAATGCTTAAAGA
GGAGGTATATGCAACAAAAAGAGCTCACCATTAATTTTTTCCCGCTGCTG
CCTTTCTATTGCCTCTAGCGTGTCCGTTTGTTCGTCGATCTTGATGACGA
CAGTTGTTACTGAAAGATGAAATGATATTAATTGCTCCAAAGTCATAATA
AAATCATTCTTTTTCCAATATAAGGCTTTGATCTTAAAAAGATAACCAAT
TCCCAAGTCAATAGATCCATCCATCATGGCAGACTTTTAggaatttatga
tttttgcccgTTATTAAAAGACAACCTGGAAAATGTGGAGCTTATTTTGG
ACTGAAGCTGGTCGATCTTTGCCTCCAGGGGCTGAAGACCGTATACGTTC
TCCGTCTGGGTGCTCACATCCATCAGAcgtatttttttggtaaaaaaacc
AGCCATTTTTCTTTTGGTTTAATTAATACTATTACTAAAACAAAAGATAA
AACGGTTAAAGCAatttaaaagaatcaaaaacGAATAAATTGACCACAGA
AACTTAAATAACATTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc
cttgagtgcccccccccgggggtttcAGAAGGTCATGTGATATCACCATC
ATTAACCAACTATCATCATTAACCGACCCTTACGAGGGATTATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021401XLOC_021401Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036352-exon-sc0001448-1491911889:3980..4666TCONS_00036352-exon-sc0001448-1491911889:3980..4666Clytia hemisphaericaexon
TCONS_00036352-exon-sc0001448-1510915933:3980..4666TCONS_00036352-exon-sc0001448-1510915933:3980..4666Clytia hemisphaericaexon
TCONS_00036352-exon-sc0001448-1575043694:3980..4666TCONS_00036352-exon-sc0001448-1575043694:3980..4666Clytia hemisphaericaexon
TCONS_00036352-exon-sc0001448-1491911889:8961..9025TCONS_00036352-exon-sc0001448-1491911889:8961..9025Clytia hemisphaericaexon
TCONS_00036352-exon-sc0001448-1510915933:8961..9025TCONS_00036352-exon-sc0001448-1510915933:8961..9025Clytia hemisphaericaexon
TCONS_00036352-exon-sc0001448-1575043694:8961..9025TCONS_00036352-exon-sc0001448-1575043694:8961..9025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001448supercontigsc0001448:3980..9025 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0865398	0.162424	0.0979848	0.144751	0.116501	0.139251	0.542989	0.550481	0	0.164935	0.198584	0.196968	0.241706	0.142758	0.100637	0.124439	0.245796	0	0.108306	0.083117	0.278735	0.217252	0	0.328631	0.70149	1.13356	0.274123	0	0	0.0738848
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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