TCONS_00036347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036347
Unique NameTCONS_00036347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length695

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036347 ID=TCONS_00036347|Name=TCONS_00036347|organism=Clytia hemisphaerica|type=transcript|length=695bp
GGTTTTCGAACTGGAAACATGAAAATTTAATCAAAGGTAACTGAAATCTA
ACTACATCATCTGGGAGATGTTCCACATTATGCACGTTATAAACACAAAA
TGTTTCACCATAGTAAACATGAGAAATGTCAACGAAACATTTTAAAAGAC
GTCGAGATGCTCCAATGTTTTGGTTTCTAATAATGTTATCTTCTTCACTG
ATCAATCGAATAGCGATGGAAAAACTAAGAAAATGCTTGAAAGCAGACAA
TGATAAATATGGTCGTAAAACTACTAATCCAGTGTACAATAAAAACGACT
TAAGTTCGGTAGCTTTCCATCGATCTATTTCAGTCAAGGCATTTCGTGCA
AATTCAGTTGGAAGCTTaatggaattcaaatcgttGGAAATGGCGTTCAA
ATAAGCAGCAGACAACTTCCCAGATTTGATTTTTCGGTAGGAACCTCTCA
TGTAGTACAAAATTCGCCTGGTGATACCAAGGTAAACCAAGTGCATTGGG
TCAAGAGTAATATCTTTGATCATATCGATTGGTAGGTNAAAATTCGCCTG
GTGATACCAAGGTAAACCAAGTGCATTGGGTTAAGAGTAATATCTTTGAT
CATATCGATTGGTAGGTCGGTAAGCTCAGAGATGACAACCTCATCTCTTG
GTGGGAAAACAGATGtatcatcgtcatcatcattATTGAGGTTGG
Run BLAST on NCBI

protein sequence of TCONS_00036347-protein

>TCONS_00036347-protein ID=TCONS_00036347-protein|Name=TCONS_00036347-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MIKDITLDPMHLVYLGITRRILYYMRGSYRKIKSGKLSAAYLNAISNDLN
SIKLPTEFARNALTEIDRWKATELKSFLLYTGLVVLRPYLSLSAFKHFLS
FSIAIRLISEEDNIIRNQNIGASRRLLKCFVDISHVYYGETFCVYNVHNV
EHLPDDVVRFQLPLIKFSCFQFEN
Run BLAST on NCBI

transcript from alignment at sc0001447:14641..15335

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036347 ID=TCONS_00036347|Name=TCONS_00036347|organism=Clytia hemisphaerica|type=transcript|length=695bp|location=Sequence derived from alignment at sc0001447:14641..15335 (Clytia hemisphaerica)
CCAACCTCAATaatgatgatgacgatgataCATCTGTTTTCCCACCAAGA
GATGAGGTTGTCATCTCTGAGCTTACCGACCTACCAATCGATATGATCAA
AGATATTACTCTTAACCCAATGCACTTGGTTTACCTTGGTATCACCAGGC
GAATTTTNACCTACCAATCGATATGATCAAAGATATTACTCTTGACCCAA
TGCACTTGGTTTACCTTGGTATCACCAGGCGAATTTTGTACTACATGAGA
GGTTCCTACCGAAAAATCAAATCTGGGAAGTTGTCTGCTGCTTATTTGAA
CGCCATTTCCaacgatttgaattccattAAGCTTCCAACTGAATTTGCAC
GAAATGCCTTGACTGAAATAGATCGATGGAAAGCTACCGAACTTAAGTCG
TTTTTATTGTACACTGGATTAGTAGTTTTACGACCATATTTATCATTGTC
TGCTTTCAAGCATTTTCTTAGTTTTTCCATCGCTATTCGATTGATCAGTG
AAGAAGATAACATTATTAGAAACCAAAACATTGGAGCATCTCGACGTCTT
TTAAAATGTTTCGTTGACATTTCTCATGTTTACTATGGTGAAACATTTTG
TGTTTATAACGTGCATAATGTGGAACATCTCCCAGATGATGTAGTTAGAT
TTCAGTTACCTTTGATTAAATTTTCATGTTTCCAGTTCGAAAACC

Coding sequence (CDS) from alignment at sc0001447:14641..15335

>TCONS_00036347 ID=TCONS_00036347|Name=TCONS_00036347|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0001447:14641..15335 (Clytia hemisphaerica)
ATGATCAAAGATATTACTCTTGACCCAATGCACTTGGTTTACCTTGGTAT
CACCAGGCGAATTTTGTACTACATGAGAGGTTCCTACCGAAAAATCAAAT
CTGGGAAGTTGTCTGCTGCTTATTTGAACGCCATTTCCaacgatttgaat
tccattAAGCTTCCAACTGAATTTGCACGAAATGCCTTGACTGAAATAGA
TCGATGGAAAGCTACCGAACTTAAGTCGTTTTTATTGTACACTGGATTAG
TAGTTTTACGACCATATTTATCATTGTCTGCTTTCAAGCATTTTCTTAGT
TTTTCCATCGCTATTCGATTGATCAGTGAAGAAGATAACATTATTAGAAA
CCAAAACATTGGAGCATCTCGACGTCTTTTAAAATGTTTCGTTGACATTT
CTCATGTTTACTATGGTGAAACATTTTGTGTTTATAACGTGCATAATGTG
GAACATCTCCCAGATGATGTAGTTAGATTTCAGTTACCTTTGATTAAATT
TTCATGTTTCCAGTTCGAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021396XLOC_021396Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036347-proteinTCONS_00036347-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036347-exon-sc0001447-1491911889:14641..15335TCONS_00036347-exon-sc0001447-1491911889:14641..15335Clytia hemisphaericaexon
TCONS_00036347-exon-sc0001447-1510915933:14641..15335TCONS_00036347-exon-sc0001447-1510915933:14641..15335Clytia hemisphaericaexon
TCONS_00036347-exon-sc0001447-1575043694:14641..15335TCONS_00036347-exon-sc0001447-1575043694:14641..15335Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001447supercontigsc0001447:14641..15335 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.769789	1.13898	1.73573	1.29382	0.0984439	0.0777917	0	0.26359	0.123031	0.0761966	0	0.0972345	0.0970993	0.201677	0.248709	0.0889676	0	0.112337	0	0.0812029	0.07058	0.309838	0.0836998	0.15219	0	0	0.200194	0.213652	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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