TCONS_00036342 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036342
Unique NameTCONS_00036342
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1923

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036342 ID=TCONS_00036342|Name=TCONS_00036342|organism=Clytia hemisphaerica|type=transcript|length=1923bp
CTCTGTTTTGTATCTTTATAGAGTTTTATTAGCCTTTTTATTATGAAGCA
AGATTTTTAGATTATATTATGTATATAGTAAAACAAAAACTCCTGTTGAT
TCAACCTTAATTTCTGAATTAAGGAGCAAGTATTATTTTTCTTGTAGAGA
AATCTTTGATGGCTTTTCCTTGGGATATTTGCTCGCAATTCAAAAGTTTT
TTTCAATTACAAATTTCAAAATGTGAAATTCTGACTATTCAGACTACGAT
TCTGAGCAAAGTATTTTGCCTCTTTATAGCAAAATGTTTAAGATGATTGC
TAGTGCACAAAGAGATATAAATCACTTTCTATGCTTAAAATTTTAACCTT
TCGAAGGAAAGGTATAATTTTGTAATTATAAACATTGAAGAAAAGTACTC
GTAAGATCTTCATTATCTCTTAACATACCAACTAGCTTCTTGATAGCTTT
TTCTGAAAGATTGTGGAACATTTTGAAGGAAAAAAATTGAAAGTGATTTC
ATCAGCATTTTACATAACCAGAAAAGAGCAAATAGACTGTCATGGGACAT
AGGAAGGGTTTACAGTTTCCAACTTATTGTATGTTTTTATTTATTTAGAA
AAGAAATGAGTCGTATTCGAAATCCAGAATGGAAGGAAGATCAATTACTT
AAAGGAAAGCTTGAAGAGTGTGTGTTGCAAAAGTATTCACGCAAAGAAAT
CCTTGTCATTGTCAAAAAACAATTTAGTCAATATGGTTGGAGCTTGAGAT
CTCTAACAGATCGTTTGAAACACTTCGATATACGCTATATAGATTATGAG
GTTTCTTTGGCTAGTGTTTACCGTGCTGTGCAGGAGGAGCTGGATGGACC
TGGTAGCCAGCTTGGATATAGAGCAATCACCCAAAAAGTCAGAGAAGTAC
ACAAGCTTAAGGTGCCCAGAGATGTGGTTTATAATGTAATGAGAGACTTG
GATCCTGATGGTCTAGCATCACGGGGAGATGTTGGAGTGTCAAAGAAGAA
AAAAAGAGAAAAGCGGTTTGCTTCTCAGGTGATCATGTACTAAGATTAAA
GATTTCATATTGTGATTACTATACAAGAATTCTACCAGAATTTGATTCTT
TTCGTCTTTATTTTTCATCTTCATTTTTAAAACTTTTTTTACAAAGTTTT
GGTATAATATTCCACTGACAGTTGCCTTTTCAGCAAGCACAAAATCAATA
AAGTTCAAATTTGAAGTGCAACTTTTCTTGCTTCCACTTCCAATTATTTT
GAGATGGATAGTTCAGTTAGCCAGGGTCAGTACCCTGCGGCTGTTTCGTC
TGGATCAATCCAAGTCAAAATATATAATGAAATTTGTGTTTTTCATTGTT
TTTATCGAATTCATTTTGAGCTATCTATATATCAAGTATTTCAGATTTTT
AGGTGTTTATTGATTTCCAGGTTACATTCAAACCCTTGTATTACTAGGGC
CCCAACTCAACAATGTCACTGGATGGACATGACAAGCTTTGTGGATTCCA
GAAAGCTACATTTCCTCTTTGTATTTATGGTGGTCAAGACTGTTACAGTG
GGAAGATTCATTTTCTAAAGATCTGGACAACCAACAACCACCCTAATGTC
ATTGGAAAATTCTACTATGATCATCTTTATGAAAATCTTGTTTTACCGAC
AACGGTGCGAATAGACAGAGGATCAGAAACTGATTTGCTTACGACCATAC
ATTGTCTTCTCCACAGAAAGAAGGAAACTTTTGAAACAGAAAGGAAATTG
ATGGGTGTTGGTGTTCAATACGGGCCATCAACTGCTAACAAGATTGAACG
CTGGTGGCGGGAACTCCATCATCGCATGGAAAAGTACTTCAAAGAACAGT
TGCGCTCGTTATTGGATAATGGTGACTATGATCGAACTTCAATCAGTGAC
aggttactttaatgggataaact
Run BLAST on NCBI

transcript from alignment at sc0001447:47847..50872-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036342 ID=TCONS_00036342|Name=TCONS_00036342|organism=Clytia hemisphaerica|type=transcript|length=3026bp|location=Sequence derived from alignment at sc0001447:47847..50872- (Clytia hemisphaerica)
CTCTGTTTTGTATCTTTATAGAGTTTTATTAGCCTTTTTATTATGAAGCA
AGATTTTTAGATTATATTATGTATATAGTAAAACAAAAACTCCTGTTGAT
TCAACCTTAATTTCTGAATTAAGGAGCAAGTATTATTTTTCTTGTAGAGA
AATCTTTGATGGCTTTTCCTTGGGATATTTGCTCGCAATTCAAAAGTTTT
TTTCAATTACAAATTTCAAAATGTGAAATTCTGACTATTCAGACTACGAT
TCTGAGCAAAGTATTTTGCCTCTTTATAGCAAAATGTTTAAGATGATTGC
TAGTGCACAAAGAGATATAAATCACTTTCTATGCTTAAAATTTTAACCTT
TCGAAGGAAAGGTATAATTTTGTAATTATAAACATTGAAGAAAAGTACTC
GTAAGATCTTCATTATCTCTTAACATACCAACTAGCTTCTTGATAGCTTT
TTCTGAAAGATTGTGGAACATTTTGAAGGAAAAAAATTGAAAGTGATTTC
ATCAGCATTTTACATAACCAGAAAAGAGCAAATAGACTGTCATGGGACAT
AGGAAGGGTTTACAGTTTCCAACTTATTGTATGTTTTTATTTATTTAGAA
AAGAAATGAGTCGTATTCGAAATCCAGAATGGAAGGAAGATCAATTACTT
AAAGGAAAGCTTGAAGAGTGTGTGTTGCAAAAGTATTCACGCAAAGAAAT
CCTTGTCATTGTCAAAAAACAATTTAGTCAATATGGTTGGAGCTTGAGAT
CTCTAACAGATCGTTTGAAACACTTCGATATACGCTATATAGATTATGAG
GTTTCTTTGGCTAGTGTTTACCGTGCTGTGCAGGAGGAGCTGGATGGACC
TGGTAGCCAGCTTGGATATAGAGCAATCACCCAAAAAGTCAGAGAAGTAC
ACAAGCTTAAGGTGCCCAGAGATGTGGTTTATAATGTAATGAGAGACTTG
GATCCTGATGGTCTAGCATCACGGGGAGATGTTGGAGTGTCAAAGAAGAA
AAAAAGAGAAAAGCGGTTTGCTTCTCAGGTGATCATGTACTAAGATTAAA
GATTTCATATTGTGATTACTATACAAGAATTCTACCAGAATTTGATTCTT
TTCGTCTTTATTTTTCATCTTCATTTTTAAAACTTTTTTTACAAAGTTTT
GGTATAATATTCCACTGACAGTTGCCTTTTCAGCAAGCACAAAATCAATA
AAGTTCAAATTTGAAGTGCAACTTTTCTTGCTTCCACTTCCAATTATTTT
GAGATGGATAGTTCAGTTAGCCAGGGTCAGTACCCTGCGGCTGTTTCGTC
TGGATCAATCCAAGTCAAAATATATAATGAAATTTGTGTTTTTCATTGTT
TTTATCGAATTCATTTTGAGCTATCTATATATCAAGTATTTCAGATTTTT
AGGTGTTTATTGATTTCCAGGTTACATTCAAACCCTTGTATTACTAGGGC
CCCAACTCAACAATGTCACTGGATGGACATGACAAGCTTTGTGGATTCCA
GAAAGCTACATTTCCTCTTTGTATTTATGGTGGTCAAGACTGTTACAGTG
GGAAGATTCATTTTCTAAAGATCTGGACAACCAACAACCACCCTAATGTC
ATTGGAAAATTCTACTATGATCATCTTTATGAAAATCTTGGTAAGTTTAT
TTTTGAAAATATCGAAAAATTGGCTTTTACAAATCATTGTCCTCTCGGGT
ACCTAGTAAGTGGCCAGCAGCTAATTAATTTTTTGAAAATTTTCCACCCA
GGACATTCTTATTTTAAACCCCTGCACTTATTAACTTTTGAGATATTTTT
CCACTCACCCCACTTACGCTTATCCCAACCCCCTGTCTTTCATATCCCGA
GGGTAGAAGGAAAGTGCTGTTTACATGAACACAAGGCCGAGTACAGTAAG
CACAAAGATAAGAGAACCTACACTTGAAAACACAATTGTCTGGAGTTTGT
TTTTATAAAATGAAATTGAGACATAATATCAAATAATTCATCGAGTTTTG
CAGATATTATTCTCAACTCTAGTTGAGCTAGAATCTGACAATGTCTGTGT
GTCACAAGGGTAGCCTGGAGACAAAAATGGTCGATTTAACTGAAATTTTA
ATCACTNATTATTCTCAACTCTAGTTGAGCTAGAATCTGACAATGTCTGT
GTGTCACAAGGGTAGCCTGGAGACAAAAATGGTCGATTTAACTGAAATTT
TAATCACTACTCCATTGGGAGATTTCTTTTATTTTTCGAAAAATTCAATA
TTTTAAGCCTGCAATGAGTTTTTTACAACTGCTACAATTGGGCCTCCGAA
TAGTTTGACAGATACTGAAGTTGAGGCCAGTGCGTTGCGCACGCTCGACT
ATTAAATAATTCAGTACGTTTCAAGAAAGGTGAATTCACCTAATTTTTTC
CTGAAACTTAAGTTCATTCCATTTAAGTTGTCTTTTTTGCCAACATATGG
AAACCATATCAGCGTAATTAAGACTAATTCCCTTGAGGGTGGTTTTCATA
TGGTAGCAAAAAATACTGCCAAATTTAATGGAGTAGACTTTAAACATGAG
AAGGAGGGAAAATTAAAATGGTGTGACACATGGCAGTTTTATAATCTAAA
TGCAATGCAATCGCTTTTATGGATCTTTTCCTTCGGTTATTTTTCTAAAA
ATGTACTTGTATCCAGCATATTCTTGCAAAAAAAAAAATTAGGTAAGTAT
GGTAAGTATGTTAGAACTAATAAGGTTATGCTTTCCCTTTCAGTTTTACC
GACAACGGTGCGAATAGACAGAGGATCAGAAACTGATTTGCTTACGACCA
TACATTGTCTTCTCCACAGAAAGAAGGAAACTTTTGAAACAGAAAGGAAA
TTGATGGGTGTTGGTGTTCAATACGGGCCATCAACTGCTAACAAGATTGA
ACGCTGGTGGCGGGAACTCCATCATCGCATGGAAAAGTACTTCAAAGAAC
AGTTGCGCTCGTTATTGGATAATGGTGACTATGATCGAACTTCAATCAGT
GACAGGTTACTTTAATGGGATAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021392XLOC_021392Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036342-exon-sc0001447-1575043694:49233..50872TCONS_00036342-exon-sc0001447-1575043694:49233..50872Clytia hemisphaericaexon
TCONS_00036342-exon-sc0001447-1575043694:47847..48129TCONS_00036342-exon-sc0001447-1575043694:47847..48129Clytia hemisphaericaexon
TCONS_00036342-exon-sc0001447-1510915933:49233..50872TCONS_00036342-exon-sc0001447-1510915933:49233..50872Clytia hemisphaericaexon
TCONS_00036342-exon-sc0001447-1510915933:47847..48129TCONS_00036342-exon-sc0001447-1510915933:47847..48129Clytia hemisphaericaexon
TCONS_00036342-exon-sc0001447-1491911889:49233..50872TCONS_00036342-exon-sc0001447-1491911889:49233..50872Clytia hemisphaericaexon
TCONS_00036342-exon-sc0001447-1491911889:47847..48129TCONS_00036342-exon-sc0001447-1491911889:47847..48129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001447supercontigsc0001447:47847..50872 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.10858	0.0679466	0.0727976	0.298073	0.284615	0.0417754	0.0504003	0.141552	0.0311546	0.245513	0.255326	0.0197088	0	0	0	0.0632893	0	0.0550226	0	0	0.303221	0.206431	0	0.0362686	0	0.0375638	0	0.0573673	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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