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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036341 ID=TCONS_00036341|Name=TCONS_00036341|organism=Clytia hemisphaerica|type=transcript|length=873bp
GTCAAACCTACGCTCGAAATATGGAGATGGCGGAAAGAGCTTTAAGGAAA
TGCCAAACAAACAATTCCAATACTCTGTTATGATGGAGATGCAAACTATT
CGTAAGAACCAAGATCGGATCCTGCAATTCCTGGAGGATTAGCAGTGCAC
GAGTGATGAAACGGGTTTTGGTACTGAGGTTCCAGAACCTTTGAATAGCA
TGGCAGAATTTATGAAAGAGGAGGCGGAACTGGAGGGATCCGAAAGAAAG
AGAAGGGCAAAGCGGATGATCATTCAGCAAGCTGGTGGAAAGTGTACGCG
GGACGCCGTCCGGAAAGCTTTAGACGTTATGATGACGAGAAAGCTacaaa
gcaaattttcaaaggaCGGCCtgcagaagaagaaaaaatttacaGGCACG
CAGCATCAAAAGTGTATGGAAGCTGTATTAATTCGAAAGTACCAAAAAGA
TGAGATCAATAGACTTTTGGTGGATGTTATTAAACGTGCGGTCGACAAAG
AATCAGAGCCATCAGACCAAGCTGCTTGTGGAATTGACAATCCTGCAAAT
GACAACGATTCTAATTAAACAGTGAAAAATTAGTCCCCACCTAAGCTGTA
AAGTCGAAAAAATACTTTCCGTAACTTTAACCTTACTTATCTAAAAGACA
TTTCATAAATCTCCAAAGTTTAATAAGAATTGCGTTTGCTGTAGCGATGA
GTTATGGAAACTTTTgtgtacatatttttttttataataataagcAACCA
AATTGCTAGTGTTCCAGCCCTGAAATTAGACAATTTCACTATCTCCTAAA
GTATAAGGTTTTAGATatccaataagcataaatatggtgtAATATCAGAG
Gtggtggtcaaagcaaatttctc Run BLAST on NCBI protein sequence of TCONS_00036341-protein >TCONS_00036341-protein ID=TCONS_00036341-protein|Name=TCONS_00036341-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
MAEFMKEEAELEGSERKRRAKRMIIQQAGGKCTRDAVRKALDVMMTRKLQ
SKFSKDGLQKKKKFTGTQHQKCMEAVLIRKYQKDEINRLLVDVIKRAVDK
ESEPSDQAACGIDNPANDNDSN Run BLAST on NCBI transcript from alignment at sc0001447:20965..22741+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036341 ID=TCONS_00036341|Name=TCONS_00036341|organism=Clytia hemisphaerica|type=transcript|length=1777bp|location=Sequence derived from alignment at sc0001447:20965..22741+ (Clytia hemisphaerica)
GTCAAACCTACGCTCGAAATATGGAGATGGCGGAAAGAGCTTTAAGGAAA
TGCCAAACAAACGTAAGTACACAACTTTGGAAATCATTCTTTTTCCAATA
AATTTAGAATCTTGAAAAACAGATATAATGACAAAGCAAGAAATAGTGAG
AGTCACGATGTTCTAAAACCTTCTTTATTTGTGTACGGGTTTGTCAAAAG
CAAACCAATATTTAGGGTcagtcgggcccgtagaacaataaatcaGTTTA
GCCTCGCTTTATACACCATATGTGATCAATTCGATCCATAAGATCACAGA
AGtgcacttttttttaaatttttgatcatttaattttgttagagtaaaaa
gtaaataatggATCCTCTGTGTGCTCAAGTGTTTATAAATATAAgaattc
tttgtttgtttttcagaCTGTATTGATACACTAGGCATTTACTTATCACA
GTTCTTTCTTTTACCCCCTTCAGAATTCCAATACTCTGTTATGATGGAGA
TGCAAACTATTCGTAAGAACCAAGATCGGATCCTGCAATTCCTGGAGGAT
TAGCAGTGCACGAGTGATGAAACGGGTTTTGGTACTGAGGTTCCAGAACC
TTTGAATAGCATGGCAGAATTTATGAAAGAGGAGGCGGAACTGGAGGGAT
CCGAAAGAAAGAGAAGGGCAAAGGTATGTAATCGATATCTCGATGTTGTC
TATGATGTAGCTAAATTGGCAGTTGGGTGAATTTAATACACTAGTCTTAA
AGGAAAAACGAGTAAAGTTTAATACGACTATATTGAAAGTGGGAGAATAA
CGACCTCGAAAATTGATAAATTGCCACAGAGCAGGACGACCTGCATTTTG
AAtcggaaaattaaaaataaggataattaaaaaaacaaaaactcataTGT
TTTTCCTCTTAGCGGATGATCATTCAGCAAGCTGGTGGAAAGTGTACGCG
GGACGCCGTCCGGAAAGCTTTAGACGTTATGATGACGAGAAAGCTacaaa
gcaaattttcaaaggaCGGCCtgcagaagaagaaaaaatttacaGGCACG
CAGCATCAAAAGTGTATGGAAGGTAAGACATTATTAGTTGAAACTtatat
taatttattgttctacgggcTCGACCGGACttgttttttccaaaatcgaa
aaactgATGATATAGAATCATGATGGAATGGAGTTTATAACCTTCTCGTA
GATTTTTTTGCAACTGAAAAAGTGTAAATATATCCTAGAACttgattgaa
taagatattgGTGAACAAATAAATGAAAGAACATGTTGTTCGGGTGTTGT
ACCTTTTTAAATATCTTATTTTACAGCTGTATTAATTCGAAAGTACCAAA
AAGATGAGATCAATAGACTTTTGGTGGATGTTATTAAACGTGCGGTCGAC
AAAGAATCAGAGCCATCAGACCAAGCTGCTTGTGGAATTGACAATCCTGC
AAATGACAACGATTCTAATTAAACAGTGAAAAATTAGTCCCCACCTAAGC
TGTAAAGTCGAAAAAATACTTTCCGTAACTTTAACCTTACTTATCTAAAA
GACATTTCATAAATCTCCAAAGTTTAATAAGAATTGCGTTTGCTGTAGCG
ATGAGTTATGGAAACTTTTgtgtacatatttttttttataataataagcA
ACCAAATTGCTAGTGTTCCAGCCCTGAAATTAGACAATTTCACTATCTCC
TAAAGTATAAGGTTTTAGATatccaataagcataaatatggtgtAATATC
AGAGGtggtggtcaaagcaaatttctc Coding sequence (CDS) from alignment at sc0001447:20965..22741+ >TCONS_00036341 ID=TCONS_00036341|Name=TCONS_00036341|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at sc0001447:20965..22741+ (Clytia hemisphaerica)
ATGGCAGAATTTATGAAAGAGGAGGCGGAACTGGAGGGATCCGAAAGAAA
GAGAAGGGCAAAGCGGATGATCATTCAGCAAGCTGGTGGAAAGTGTACGC
GGGACGCCGTCCGGAAAGCTTTAGACGTTATGATGACGAGAAAGCTacaa
agcaaattttcaaaggaCGGCCtgcagaagaagaaaaaatttacaGGCAC
GCAGCATCAAAAGTGTATGGAAGCTGTATTAATTCGAAAGTACCAAAAAG
ATGAGATCAATAGACTTTTGGTGGATGTTATTAAACGTGCGGTCGACAAA
GAATCAGAGCCATCAGACCAAGCTGCTTGTGGAATTGACAATCCTGCAAA
TGACAACGATTCTAATTAAATGGCAGAATTTATGAAAGAGGAGGCGGAAC
TGGAGGGATCCGAAAGAAAGAGAAGGGCAAAGCGGATGATCATTCAGCAA
GCTGGTGGAAAGTGTACGCGGGACGCCGTCCGGAAAGCTTTAGACGTTAT
GATGACGAGAAAGCTacaaagcaaattttcaaaggaCGGCCtgcagaaga
agaaaaaatttacaGGCACGCAGCATCAAAAGTGTATGGAAGCTGTATTA
ATTCGAAAGTACCAAAAAGATGAGATCAATAGACTTTTGGTGGATGTTAT
TAAACGTGCGGTCGACAAAGAATCAGAGCCATCAGACCAAGCTGCTTGTG
GAATTGACAATCCTGCAAATGACAACGATTCTAATTAAATGGCAGAATTT
ATGAAAGAGGAGGCGGAACTGGAGGGATCCGAAAGAAAGAGAAGGGCAAA
GCGGATGATCATTCAGCAAGCTGGTGGAAAGTGTACGCGGGACGCCGTCC
GGAAAGCTTTAGACGTTATGATGACGAGAAAGCTacaaagcaaattttca
aaggaCGGCCtgcagaagaagaaaaaatttacaGGCACGCAGCATCAAAA
GTGTATGGAAGCTGTATTAATTCGAAAGTACCAAAAAGATGAGATCAATA
GACTTTTGGTGGATGTTATTAAACGTGCGGTCGACAAAGAATCAGAGCCA
TCAGACCAAGCTGCTTGTGGAATTGACAATCCTGCAAATGACAACGATTC
TAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036341-exon-sc0001447-1491911889:20965..21026 | TCONS_00036341-exon-sc0001447-1491911889:20965..21026 | Clytia hemisphaerica | exon |
| TCONS_00036341-exon-sc0001447-1510915933:20965..21026 | TCONS_00036341-exon-sc0001447-1510915933:20965..21026 | Clytia hemisphaerica | exon |
| TCONS_00036341-exon-sc0001447-1575043694:20965..21026 | TCONS_00036341-exon-sc0001447-1575043694:20965..21026 | Clytia hemisphaerica | exon |
| TCONS_00036341-exon-sc0001447-1491911889:21438..21637 | TCONS_00036341-exon-sc0001447-1491911889:21438..21637 | Clytia hemisphaerica | exon |
| TCONS_00036341-exon-sc0001447-1510915933:21438..21637 | TCONS_00036341-exon-sc0001447-1510915933:21438..21637 | Clytia hemisphaerica | exon |
| TCONS_00036341-exon-sc0001447-1575043694:21438..21637 | TCONS_00036341-exon-sc0001447-1575043694:21438..21637 | Clytia hemisphaerica | exon |
| TCONS_00036341-exon-sc0001447-1491911889:21877..22036 | TCONS_00036341-exon-sc0001447-1491911889:21877..22036 | Clytia hemisphaerica | exon |
| TCONS_00036341-exon-sc0001447-1510915933:21877..22036 | TCONS_00036341-exon-sc0001447-1510915933:21877..22036 | Clytia hemisphaerica | exon |
| TCONS_00036341-exon-sc0001447-1575043694:21877..22036 | TCONS_00036341-exon-sc0001447-1575043694:21877..22036 | Clytia hemisphaerica | exon |
| TCONS_00036341-exon-sc0001447-1491911889:22291..22741 | TCONS_00036341-exon-sc0001447-1491911889:22291..22741 | Clytia hemisphaerica | exon |
| TCONS_00036341-exon-sc0001447-1510915933:22291..22741 | TCONS_00036341-exon-sc0001447-1510915933:22291..22741 | Clytia hemisphaerica | exon |
| TCONS_00036341-exon-sc0001447-1575043694:22291..22741 | TCONS_00036341-exon-sc0001447-1575043694:22291..22741 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001447 | supercontig | sc0001447:20965..22741 + |
Blast
The following BLAST results are available for this feature:
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