TCONS_00036329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036329
Unique NameTCONS_00036329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length186

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036329 ID=TCONS_00036329|Name=TCONS_00036329|organism=Clytia hemisphaerica|type=transcript|length=186bp
CCATAACAGTTGCTGCAAACAGAAGGATATTATATGACATTCGGGGTGGA
TATGGGGTAAATCGTTGGAATGCAGAGTTTGCCATTGCTTTCACCTTGGG
AAGATTGTTGTTTATTTCAACAACAGATTCCGTTCTTGAATCAGgAGGAA
GCAACATCCTTCTTCTCTATGGACACCACGAAACTG
Run BLAST on NCBI

transcript from alignment at sc0001443:32027..33237+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036329 ID=TCONS_00036329|Name=TCONS_00036329|organism=Clytia hemisphaerica|type=transcript|length=1211bp|location=Sequence derived from alignment at sc0001443:32027..33237+ (Clytia hemisphaerica)
CCATAACAGTTGCTGCAAACAGAAGgtaaattttcaagaaattttactAT
TATAATATTATTTCAATGAAACCAACAATAGATTAATGATATTTTGTGAG
AATATATATTTCGATCTCTAGTATCATTTTCAgctgtaaaatacaaaaac
aaagtGTAAAACTGAGTAAAATGTTATTCGATTTCTACACATACAACAAA
CACATACTAACATATACTAACTACAAGAtactttttgatttcaaattttt
taactaCTTGCATAAAAGCAGTAAGGAGGCATAGTGTCCTGTACCAACTA
CTTGACCCCCTGTTCCAACAGGCCATTACTTTTGATATTGCTTGTTCAAA
TGCTATGCATTTAAATGTGCTGAgtgctaattttttttgaaacaaacTCA
AAATCTAATTACGGTAATATGCTTTAtagtaatttatactttttattgtt
tcttttttctcttcagGATATTATATGACATTCGGGGTGGATATGGGGTA
AATCGTTGGAATGCAGAGTTTGCCATTGCTTTCACCTTGGGAAGATTGTT
GTTTATTTCAACAACAGATTCCGTTCTTGAATCAGGTTTCAAAATATTCC
TTTTTATGTACATATTATGTATCTTTTAAAAGTTAACAGGTTACGTTTTT
GACGTTTTCTTTGGTCTAGAGCGCATGGCGCTAGGCCAGATATGATgtca
atttttctgaaaagatttAAATAGAAATGTTGGTGTGGTAGTGCCCTTTG
GTTTACTATTCTTAAAATGATGTTAGAGATTGATAAACAACTTatctttt
tcactgtttttttgtgaaaaagcaTGAAAAAAGAATGGAAACTTCTCGAA
ATGAAAATAGCGACCAGCTTTTCTCCAGCTTTGACAAcggtaaagcctta
aaataccAGACGTTATGATAAAAATTCAGCTGAAATGAAAGTACCAGCTC
CAATgataaaaatatatgaaaaagtTTAGATGCTATTGCACTGAATTTAA
ATGATAAAACTACCTGAGGGTATTTTAATTGAAACCAAATAGTGCAGGAA
TTCAGTTGGAATTTGATTTGAGTCAATCTTGAGAATCTATCCATTAGGAT
TTATCCAGATaattcattttgatgaaaatgctcTATACTCATTCAtactt
atttttatcaaaattttaggAGGAAGCAACATCCTTCTTCTCTATGGACA
CCACGAAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021386XLOC_021386Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036329-exon-sc0001443-1491911889:32027..32051TCONS_00036329-exon-sc0001443-1491911889:32027..32051Clytia hemisphaericaexon
TCONS_00036329-exon-sc0001443-1510915933:32027..32051TCONS_00036329-exon-sc0001443-1510915933:32027..32051Clytia hemisphaericaexon
TCONS_00036329-exon-sc0001443-1575043694:32027..32051TCONS_00036329-exon-sc0001443-1575043694:32027..32051Clytia hemisphaericaexon
TCONS_00036329-exon-sc0001443-1491911889:32493..32611TCONS_00036329-exon-sc0001443-1491911889:32493..32611Clytia hemisphaericaexon
TCONS_00036329-exon-sc0001443-1510915933:32493..32611TCONS_00036329-exon-sc0001443-1510915933:32493..32611Clytia hemisphaericaexon
TCONS_00036329-exon-sc0001443-1575043694:32493..32611TCONS_00036329-exon-sc0001443-1575043694:32493..32611Clytia hemisphaericaexon
TCONS_00036329-exon-sc0001443-1491911889:33196..33237TCONS_00036329-exon-sc0001443-1491911889:33196..33237Clytia hemisphaericaexon
TCONS_00036329-exon-sc0001443-1510915933:33196..33237TCONS_00036329-exon-sc0001443-1510915933:33196..33237Clytia hemisphaericaexon
TCONS_00036329-exon-sc0001443-1575043694:33196..33237TCONS_00036329-exon-sc0001443-1575043694:33196..33237Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001443supercontigsc0001443:32027..33237 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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