TCONS_00036319 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036319
Unique NameTCONS_00036319
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length451

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036319 ID=TCONS_00036319|Name=TCONS_00036319|organism=Clytia hemisphaerica|type=transcript|length=451bp
CACGAAAGATTGTTGTGTAGCTGTGATatgaaaatgaatttcaagaaaaG
ATAACATTTTAGCATCTGAAGAAAAATGCTGATATGTCAACACGAACATC
CATAATGGCCATTTTCGAATTGACTAATACTGTAACCGAAATCGATGTCT
GTCCCGATCACCccttttaacgaaaaaaaatctggaagACTTGGAACGAT
TATGATCAAAGATTCCTCGACGTTAATTACAACCTAACCAATTCTCGATC
GTCGTGTTTCTTGTAAACTCTTGGATATGTAGTGACAATAAAAACGGTGT
TTGATGGGTACAAGCTGGCTAATAACAAACAAcgatcttgctccacattt
gattCTTGAATTGTTGGAAATGTTCAAACATTATTACTTAGAAAACTAAG
CCTGAACTAATGCACTCTCAAAGGCTGTCAGAATTCTTATGTTAGTACac
g
Run BLAST on NCBI

transcript from alignment at sc0001442:34565..35379-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036319 ID=TCONS_00036319|Name=TCONS_00036319|organism=Clytia hemisphaerica|type=transcript|length=815bp|location=Sequence derived from alignment at sc0001442:34565..35379- (Clytia hemisphaerica)
CACGAAAGATTGTTGTGTAGCTGTGATATGAAAATGAATTTCAAGAAAAG
ATAACATTTTAGCATCTGAAGAAAAATGGTAAGATCGTAATTTATAATTT
ATAATTTATTTCATATATTCACCTTTTTTGAGTACTTGTGGTTGTACCGG
TTCGTAAATCTGAAAAGATTTTGTCAAGAAAAACCTGATTTCTCTGTTGT
AATTCATAAAAAGTTTTTAATCGAGATTTGCAATAAATTTCTTTGAAGGA
TTTTGACAAACCATGTTCTGACTTTGTTAACTTTTTCTTTGCATTGTCAT
GATTGCTTGATTGCTGTGTAAAATTGCGTACCCAAACACATCGAGGAAAT
ACATTGTCAAATTTCTTCTGACATTTTGGATACGGCATGAAGTGCAGTGC
CACAAATACTAATCATTTTATAATGCTCTTTTTTCGTTACAGCTGATATG
TCAACACGAACATCCATAATGGCCATTTTCGAATTGACTAATACTGTAAC
CGAAATCGATGTCTGTCCCGATCACCCCTTTTAACGAAAAAAAATCTGGA
AGACTTGGAACGATTATGATCAAAGATTCCTCGACGTTAATTACAACCTA
ACCAATTCTCGATCGTCGTGTTTCTTGTAAACTCTTGGATATGTAGTGAC
AATAAAAACGGTGTTTGATGGGTACAAGCTGGCTAATAACAAACAACGAT
CTTGCTCCACATTTGATTCTTGAATTGTTGGAAATGTTCAAACATTATTA
CTTAGAAAACTAAGCCTGAACTAATGCACTCTCAAAGGCTGTCAGAATTC
TTATGTTAGTACACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021376XLOC_021376Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036319-exon-sc0001442-1575043694:35302..35379TCONS_00036319-exon-sc0001442-1575043694:35302..35379Clytia hemisphaericaexon
TCONS_00036319-exon-sc0001442-1575043694:34565..34937TCONS_00036319-exon-sc0001442-1575043694:34565..34937Clytia hemisphaericaexon
TCONS_00036319-exon-sc0001442-1510915933:35302..35379TCONS_00036319-exon-sc0001442-1510915933:35302..35379Clytia hemisphaericaexon
TCONS_00036319-exon-sc0001442-1510915933:34565..34937TCONS_00036319-exon-sc0001442-1510915933:34565..34937Clytia hemisphaericaexon
TCONS_00036319-exon-sc0001442-1491911889:35302..35379TCONS_00036319-exon-sc0001442-1491911889:35302..35379Clytia hemisphaericaexon
TCONS_00036319-exon-sc0001442-1491911889:34565..34937TCONS_00036319-exon-sc0001442-1491911889:34565..34937Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001442supercontigsc0001442:34565..35379 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.625954	0.789749	1.37275	1.36698	40.2871	25.1572	17.2457	18.1879	17.4685	14.0096	19.9035	10.8016	3.42636	2.33963	1.10596	1.15827	6.86071	7.30354	3.38961	3.36995	5.12106	2.53438	1.21776	2.31489	2.44604	2.37236	4.95517	4.11789	7.11028	4.62044
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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