TCONS_00036318 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036318
Unique NameTCONS_00036318
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length145

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036318 ID=TCONS_00036318|Name=TCONS_00036318|organism=Clytia hemisphaerica|type=transcript|length=145bp
GTATAGAGAAAAATATTacttaaaaatttataaatgacGATGTGAGTATT
GTTAAAGAAAATGGCAGATAATGAAGAAAGAGCGCGCTCAAGAAGAGCAT
CTCGTAGACGAAGTTGTTTGAAGACAATTGTTGGAAATCAACAGG
Run BLAST on NCBI

transcript from alignment at sc0001442:2239..2889-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036318 ID=TCONS_00036318|Name=TCONS_00036318|organism=Clytia hemisphaerica|type=transcript|length=651bp|location=Sequence derived from alignment at sc0001442:2239..2889- (Clytia hemisphaerica)
GTATAGAGAAAAATATTACTTAAAAATTTATAAATGACGATGTGAGTATT
GTTAAAGAAAATGGCAGATAATGAAGAAAGGTATACAACTTTTATTTGAT
TCAGTTGATACGTTCCTGTATTTGCTTAAAAATTAATGATACCCAATAAA
TGCCCCTACTGAAACTGAGAACTCATTTTTCCTTGTCAACATCAATTTTC
AGGTACATAGGTCCATTCAACATGTAGCTTGTTTTTCTTATTTGTTTTGT
CCATCCATTTTAGAGCGCGCTCAAGAAGAGCATCTCGTAGACGAAGTGTA
AGTTCTTTTCTATTCAATTTTTTCTGATTTATTAGATTTATACACAATAT
ACTTCTAAATTAGGAGAGAACGAAGGAAGTGACAAAATCAAACTTAATTT
TTCTTTTTACTTTGTTAGACCTGAGACTTTGATTGCTTTGTTTTAGTGCT
ACACCTACTCTGTCAGCGCTCAGTTACCTATTGCCTATCCAAGCTACTCG
TTCTCTGATTTATGGAACCTAACACCTTTGAATTGAAAGATGAAGGCTCT
ACCAATTTGTATAATATACATTTTAGATCTGAGTCAGTCTATTATATAAA
ACTATCTTTGATTTTTGTAGTGTTTGAAGACAATTGTTGGAAATCAACAG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021375XLOC_021375Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036318-exon-sc0001442-1575043694:2810..2889TCONS_00036318-exon-sc0001442-1575043694:2810..2889Clytia hemisphaericaexon
TCONS_00036318-exon-sc0001442-1575043694:2593..2626TCONS_00036318-exon-sc0001442-1575043694:2593..2626Clytia hemisphaericaexon
TCONS_00036318-exon-sc0001442-1575043694:2239..2269TCONS_00036318-exon-sc0001442-1575043694:2239..2269Clytia hemisphaericaexon
TCONS_00036318-exon-sc0001442-1510915933:2810..2889TCONS_00036318-exon-sc0001442-1510915933:2810..2889Clytia hemisphaericaexon
TCONS_00036318-exon-sc0001442-1510915933:2593..2626TCONS_00036318-exon-sc0001442-1510915933:2593..2626Clytia hemisphaericaexon
TCONS_00036318-exon-sc0001442-1510915933:2239..2269TCONS_00036318-exon-sc0001442-1510915933:2239..2269Clytia hemisphaericaexon
TCONS_00036318-exon-sc0001442-1491911889:2810..2889TCONS_00036318-exon-sc0001442-1491911889:2810..2889Clytia hemisphaericaexon
TCONS_00036318-exon-sc0001442-1491911889:2593..2626TCONS_00036318-exon-sc0001442-1491911889:2593..2626Clytia hemisphaericaexon
TCONS_00036318-exon-sc0001442-1491911889:2239..2269TCONS_00036318-exon-sc0001442-1491911889:2239..2269Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001442supercontigsc0001442:2239..2889 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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