|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036315 ID=TCONS_00036315|Name=TCONS_00036315|organism=Clytia hemisphaerica|type=transcript|length=936bp
GTTTAAAAAGTGGACCAAGATTATGTAAACTCTCTCAAAGACAAATAGAT
ACATTGTCAAATAGCTCATCTGTTCTTCACAACACCCTTCCCTCTGAATT
TGCTCGACAGCCAAGATCTTTGAAGTGGTTGAAGCGTTGGAAGGCTACTG
AATTTAAGCAGTTTCTTCTTTACACTGgaatgtttgttttgaaaggagTG
GTGAACGCTGATGTTTATCGACACTTTTTGGCTTTAAGTGTCTCTGTCTC
AGTGTTGATGTATTTTAAACCTGAGGAGGAAAACTATCTGAACCTGTTTA
ATTTTACTAAACAGCTTTTGAAATGGTTTGTTGAAAAATCATCAGATTTA
TATGGAGGAAGTTTTGTCTCGTACAATGTCCATTCCACAATACACTTACA
CGAAGATGTTGAGAATTTTAACTGTGGCTTGGCAGATCTTTCAGCTTACC
CATTTGAGAATTTTCTGCATCGAATCAAAAAGATGGTTAGGAAAAGCCAT
CAACCTCTGCCACAGATTGCCAAAAGAATCCAAGAGATGGAAAAAACTGG
TGTTGACTTTGTAAGTAAAGTTATACACACAAAAGTGAGGTCTGTGTTAA
AAGGTAACCGTGATGCATGGTTTCTTACCAGTAACAATAAAATATGTGAA
GTTCTTGATGTAAAAGGCAAAGAAATATCAGCACGTCTGTATTCTTTCAA
GAAAACAAGATCATACTTTGATGAGCCTGTTGATTCTAAAGATATTGGAA
TTTGTGTCTTGCTGGAAAACACTACCTTTAAAGAGTCAACAATCTATACA
ACAGACATTAAGAAAAAGTTTGTTGCCATTCCTACTAAGAATGGAATGCT
TCTCATTCCCATGCTTCATAATTTAGAACTGTAAAATTCATCAAATGAAT
GCATACTATATTCAGAATTTTGTTTCACCTAATTTG Run BLAST on NCBI protein sequence of TCONS_00036315-protein >TCONS_00036315-protein ID=TCONS_00036315-protein|Name=TCONS_00036315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
LKSGPRLCKLSQRQIDTLSNSSSVLHNTLPSEFARQPRSLKWLKRWKATE
FKQFLLYTGMFVLKGVVNADVYRHFLALSVSVSVLMYFKPEEENYLNLFN
FTKQLLKWFVEKSSDLYGGSFVSYNVHSTIHLHEDVENFNCGLADLSAYP
FENFLHRIKKMVRKSHQPLPQIAKRIQEMEKTGVDFVSKVIHTKVRSVLK
GNRDAWFLTSNNKICEVLDVKGKEISARLYSFKKTRSYFDEPVDSKDIGI
CVLLENTTFKESTIYTTDIKKKFVAIPTKNGMLLIPMLHNLEL Run BLAST on NCBI transcript from alignment at sc0001439:55425..56360 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036315 ID=TCONS_00036315|Name=TCONS_00036315|organism=Clytia hemisphaerica|type=transcript|length=936bp|location=Sequence derived from alignment at sc0001439:55425..56360 (Clytia hemisphaerica)
CAAATTAGGTGAAACAAAATTCTGAATATAGTATGCATTCATTTGATGAA
TTTTACAGTTCTAAATTATGAAGCATGGGAATGAGAAGCATTCCATTCTT
AGTAGGAATGGCAACAAACTTTTTCTTAATGTCTGTTGTATAGATTGTTG
ACTCTTTAAAGGTAGTGTTTTCCAGCAAGACACAAATTCCAATATCTTTA
GAATCAACAGGCTCATCAAAGTATGATCTTGTTTTCTTGAAAGAATACAG
ACGTGCTGATATTTCTTTGCCTTTTACATCAAGAACTTCACATATTTTAT
TGTTACTGGTAAGAAACCATGCATCACGGTTACCTTTTAACACAGACCTC
ACTTTTGTGTGTATAACTTTACTTACAAAGTCAACACCAGTTTTTTCCAT
CTCTTGGATTCTTTTGGCAATCTGTGGCAGAGGTTGATGGCTTTTCCTAA
CCATCTTTTTGATTCGATGCAGAAAATTCTCAAATGGGTAAGCTGAAAGA
TCTGCCAAGCCACAGTTAAAATTCTCAACATCTTCGTGTAAGTGTATTGT
GGAATGGACATTGTACGAGACAAAACTTCCTCCATATAAATCTGATGATT
TTTCAACAAACCATTTCAAAAGCTGTTTAGTAAAATTAAACAGGTTCAGA
TAGTTTTCCTCCTCAGGTTTAAAATACATCAACACTGAGACAGAGACACT
TAAAGCCAAAAAGTGTCGATAAACATCAGCGTTCACCActcctttcaaaa
caaacattcCAGTGTAAAGAAGAAACTGCTTAAATTCAGTAGCCTTCCAA
CGCTTCAACCACTTCAAAGATCTTGGCTGTCGAGCAAATTCAGAGGGAAG
GGTGTTGTGAAGAACAGATGAGCTATTTGACAATGTATCTATTTGTCTTT
GAGAGAGTTTACATAATCTTGGTCCACTTTTTAAAC Coding sequence (CDS) from alignment at sc0001439:55425..56360 >TCONS_00036315 ID=TCONS_00036315|Name=TCONS_00036315|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at sc0001439:55425..56360 (Clytia hemisphaerica)
TTACAGTTCTAAATTATGAAGCATGGGAATGAGAAGCATTCCATTCTTAG
TAGGAATGGCAACAAACTTTTTCTTAATGTCTGTTGTATAGATTGTTGAC
TCTTTAAAGGTAGTGTTTTCCAGCAAGACACAAATTCCAATATCTTTAGA
ATCAACAGGCTCATCAAAGTATGATCTTGTTTTCTTGAAAGAATACAGAC
GTGCTGATATTTCTTTGCCTTTTACATCAAGAACTTCACATATTTTATTG
TTACTGGTAAGAAACCATGCATCACGGTTACCTTTTAACACAGACCTCAC
TTTTGTGTGTATAACTTTACTTACAAAGTCAACACCAGTTTTTTCCATCT
CTTGGATTCTTTTGGCAATCTGTGGCAGAGGTTGATGGCTTTTCCTAACC
ATCTTTTTGATTCGATGCAGAAAATTCTCAAATGGGTAAGCTGAAAGATC
TGCCAAGCCACAGTTAAAATTCTCAACATCTTCGTGTAAGTGTATTGTGG
AATGGACATTGTACGAGACAAAACTTCCTCCATATAAATCTGATGATTTT
TCAACAAACCATTTCAAAAGCTGTTTAGTAAAATTAAACAGGTTCAGATA
GTTTTCCTCCTCAGGTTTAAAATACATCAACACTGAGACAGAGACACTTA
AAGCCAAAAAGTGTCGATAAACATCAGCGTTCACCActcctttcaaaaca
aacattcCAGTGTAAAGAAGAAACTGCTTAAATTCAGTAGCCTTCCAACG
CTTCAACCACTTCAAAGATCTTGGCTGTCGAGCAAATTCAGAGGGAAGGG
TGTTGTGAAGAACAGATGAGCTATTTGACAATGTATCTATTTGTCTTTGA
GAGAGTTTACATAATCTTGGTCCACTTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036315-exon-sc0001439-1491911889:55425..56360 | TCONS_00036315-exon-sc0001439-1491911889:55425..56360 | Clytia hemisphaerica | exon |
| TCONS_00036315-exon-sc0001439-1510915933:55425..56360 | TCONS_00036315-exon-sc0001439-1510915933:55425..56360 | Clytia hemisphaerica | exon |
| TCONS_00036315-exon-sc0001439-1575043694:55425..56360 | TCONS_00036315-exon-sc0001439-1575043694:55425..56360 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001439 | supercontig | sc0001439:55425..56360 . |
Blast
The following BLAST results are available for this feature:
|
