TCONS_00036314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036314
Unique NameTCONS_00036314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036314 ID=TCONS_00036314|Name=TCONS_00036314|organism=Clytia hemisphaerica|type=transcript|length=404bp
aaacaaacttggaaaactttgcaaGAAGCTGAGTCCTGAGAGGGACATGT
TTGTCTGGATTTATTTCTACCTCAAGAAAAAAAAACAGTCATAAGACGAA
ATTTATACAAGGGAGAGAATGGATATTGTCATTGTAGAAGTACTCAAAAA
TTATGGGAATGATTTGCTTTGAATCTTGTTGTGAGGAATTTTCGGAGGAT
TTTATTTTGTCCATCATGATACAGCATGACCCATGGCCTGCAAAATACAG
CAGCAGCAGAAGCATATGATAGGGCTATCTAGTCTAGTgaccaacaaaga
caaaattgttgaattgattGCATATGATACTGAACCTGTCAAATAGTTCC
GATAGAAAGAGATTGTAAACAGACTTCTCAAGACcatgaatgtgattttt
gtta
Run BLAST on NCBI

transcript from alignment at sc0001439:45667..46070

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036314 ID=TCONS_00036314|Name=TCONS_00036314|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at sc0001439:45667..46070 (Clytia hemisphaerica)
taacaaaaatcacattcatgGTCTTGAGAAGTCTGTTTACAATCTCTTTC
TATCGGAACTATTTGACAGGTTCAGTATCATATGCaatcaattcaacaat
tttgtctttgttggtcACTAGACTAGATAGCCCTATCATATGCTTCTGCT
GCTGCTGTATTTTGCAGGCCATGGGTCATGCTGTATCATGATGGACAAAA
TAAAATCCTCCGAAAATTCCTCACAACAAGATTCAAAGCAAATCATTCCC
ATAATTTTTGAGTACTTCTACAATGACAATATCCATTCTCTCCCTTGTAT
AAATTTCGTCTTATGACTGTTTTTTTTTCTTGAGGTAGAAATAAATCCAG
ACAAACATGTCCCTCTCAGGACTCAGCTTCttgcaaagttttccaagttt
gttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021372XLOC_021372Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036314-exon-sc0001439-1491911889:45667..46070TCONS_00036314-exon-sc0001439-1491911889:45667..46070Clytia hemisphaericaexon
TCONS_00036314-exon-sc0001439-1510915933:45667..46070TCONS_00036314-exon-sc0001439-1510915933:45667..46070Clytia hemisphaericaexon
TCONS_00036314-exon-sc0001439-1575043694:45667..46070TCONS_00036314-exon-sc0001439-1575043694:45667..46070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001439supercontigsc0001439:45667..46070 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.999327	0.524179	0.520608	1.10787	0.855203	3.73018	1.64952	2.29148	1.76244	2.07787	0.783929	0.992704	1.48503	0.243372	0	0.909798	0	1.94237	0.323028	2.23463	1.83468	2.95986	4.99214	2.70807	2.24335	2.36442	6.17538	3.34679	4.35885	2.44078
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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