TCONS_00036312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036312
Unique NameTCONS_00036312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036312 ID=TCONS_00036312|Name=TCONS_00036312|organism=Clytia hemisphaerica|type=transcript|length=441bp
TTCGACCATGATGGGGAGAAGGAGTCAGACGTATGGTTCAAGAAAATCGa
tctggggatttgaattccaattTGATTACCAACTTAGCTGCATGATGAAG
AGATTTCATCCTGCTCGACTACGTGGTATTGGAATAATCTAACGAGCAAA
TTCAAGCTGTATTGATGGATCCTAAGAAGATTGCAAATCACCCCCAACCC
AACGTATAAAGAATAAGAAGAGTAAAATCACTTGCTTATAAAGTTGCTGC
AGTTGATGTTCAATGCTGGCACAAACGCTGAATAAAAACTTTATTTCGAA
AGTCCCTAATCTGGAAAAATGCATTGGGAGGAAGAAAACAACGAAAGAAG
ACAACGAAAGAAGACAACGTATACGTCCACTCATCTTAACGTCTTAAATA
AATTATTGTTATACCTTGGTGTTGGTTTTTTTGGTTTTCTC
Run BLAST on NCBI

transcript from alignment at sc0001439:4870..10838-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036312 ID=TCONS_00036312|Name=TCONS_00036312|organism=Clytia hemisphaerica|type=transcript|length=5969bp|location=Sequence derived from alignment at sc0001439:4870..10838- (Clytia hemisphaerica)
TTCGACCATGATGGGGAGAAGGAGTCAGACGTATGGTTCAAGAAAATCGA
TCTGGGGATTTGAATTCCAATTTGATTACCAACTTAGCTGCATGATGTAA
GTAATTCGATTTCCTGCCAAAAGTATTTCTTCTTATGACATGTATTGAAA
TGAGCTGAAACCTTCCAGTTGAAACGTCTTAAAAACTTGAAAAATATATG
AAACTTCCTCAATGCATCAAATGTCATTTGTTATTAGTTCAAAGCAGACT
AATGAACAAGAAAATAATAAACACATTCCCTGTAATGCTGCTTCTATCAC
AAATTTGCTCTCCAATCTGACATTGAGGAAAACAAACTATTATCTTAGGC
TAATGGAATGGGCTATTTCAAAAAATTGTACAGGGATATTGACATACTTC
TTTCAGTAACCCCCCCTGGAAATTTTGGATAATAAACTTTTATCCCATGG
AAGTTAGGTCGACACCCCTGGAAAGTGAAATTTTGTGATAAAAGGGCCTG
CAAAATGACTATTGATGTCAGTTTATGAGGAGAGAACGCATGGAAACCTT
TAACCAGGCGATGTCAAACGAACTGTTCAATTATCGAACTAATCGAACCC
TATCGAACAATAGCTGTTCGATTATCGAACCCAATTGAACACCTATCGAA
CCGAGAAAACTTTCGTAAAGTTCAATGACTGTTTGATTATACGATTGAGG
TTCGATCAGTTCTATGAATCCGATTGAAGTTCGATCAGTTAGATTAAGAT
CTATTATATGAAGTTCTATTGGTTCGATTAAATCAATTTATACCTTACCG
CCCAATTTTTTGTTTAAATTCCAAGGGCGTATGGAAGGCCGCCCACAGGC
CATTCTTGCCGGCCATCCTAAATCTATCCCAATCGGACGGGACAAGCTGG
AGCTTTTTGTAAGATTATCGGTTGGTTGTTAATTTGTAAAAAAAAGATTT
TAATTTCTATTACTTTCTTTAAAGAAAGTGTCATCCCTATTATTTCAAAT
GAGCAATAATGAGTGAAGCACACGGTGCCTGCGTTTTGATTAAACAACCT
TGTAATTTTCTGAAAGGTAAAGAAAAGTAGAATCAATCCGACACAATCGT
CGAACGTTCATCGAACCACGTCAAACTTAAATCGAACTCATCGAACCACG
TCGAACTTCATCGAACCACGTCAAACTTAAATCGAACTCATCGAACTAAA
TCGAACTTAAATCGAACTCATCGAACCACGTCGAACTTCATCGAACCACG
TCAAACTTAAATCGAACTCATCGAACTAAATCGAACTCGTTAAGAAATTT
TTGAAAGTTCGATAGCTGTTCGATCGGGTTCGGTAATCGAACAGCTATCG
TTCAATTTTTTTCGATAAAGTTTGATGGTTCGATAACAAAAATCTATTCG
ATAGGGTTCGGTTGACACTGCCTGTCTTTAATATCCCCTTGGAAAATTTG
AAAAATGAAAAGAAACTCTTTGGAAAATCAAGGCCTGGACCCCACTTGAA
AAATATATGGTTTAAAAATGGAATAGCTCAAATAATGTTGCGTTTACTAC
CTGGATGTGATTTCTGAAAGACTCTTCAAGTTGGCATTTAAATGTGTTAG
TTAATTTTCAGGAAAATGTAGTAAAGCAAAATCTTTAAACTTTTTTACTC
AAATGATGTTTTTATCTTTTGTAGGAAGAGATTTCATCCTGCTCGACTAC
GTGGTATTGGAATAATCTAACGAGCAAATTCAAGGTAGAGAGAATTATAA
TTTTCTTTGATGTAATTTTATTTTGCAATAGTTTGTAGAATCCTCAAAAA
TTCTTTGTCTTTTGTGAATCAGTGGTTCTAAAATTTTTACAAAGACCATA
CTAGACCATTCCAGAATTTTTCTGTAACTGGGGGCGGACGACGCACAATT
TCCGAGGGCAAAAATTTTCATCAAAATTCGAAATTTCCAAGGCGAGAAGA
AAATGTTTGAATTTCCAAGCCAATTGAATTAAAAAAGGCAAAAAAGAGAG
GAATTTTCAATGCATTTTGCAGAAGTACATAGATTTCGTAATTCGCGACC
ACCACTGGAAAAGAAAAATTATTTCTGAGGCTAGAAAAAATTATAAAATA
CACGTCGTCCGACAGGGGTAACAAAAATTTTCAGGAATGGCCCACTGTAA
ATGGTTGAAAAAATTATGTTTGTAAGCAATATATGATCTAGTTATAGAAT
AAAAATAGAAATTATAGAATCAAAATTGAATAAATTTTCCATTTCCTCTA
CAAAACATGAAATCTAGCAAATATTGGGAAAGAATCATTTGGACTAATTT
TACAATCTCAGACAAAATGTTTTGAAGAGAATATAGCGAATATCTTAATG
AAGGATGCCTCAAATTTCTCTGGAGTAGAGTATTATATGTACAAAATATT
TGATGAACGTAATGATTTAGAAAAAATATTTCGCGAATCTGATAAGATAA
CCAACTTTTCTTGAAACTTAAAGATTGAATTGCTTACAGGGAACCCTTTT
TACAAAGACCTAAAAATTAGCCTTAATTGCTAGCACAGTGTTTCTTGTTG
GCCTGCCGGTACTTTTTAAGTTTTTCAGTTATGATTTTTTTTACATGGTA
TTCCAGGGGTTTGGAAATGTTGAACTTTTGAAACGTAGCTTTCAGGATAG
CCTCCATCCTTTTAGTGTCAAATTTCATGTATCCTTGACGACCATTTATG
TTGCACGTCATTATCTCTCCAGGACTAAAAAATTTCTTCACTTGCTTGAC
CCCGTATTCAGCTGCTTCTTTGATGTTGCGTTCATCTGAGTCGAGGCTGT
TGGATAGTTGCTCAGCAATCATTTGTATCTGTAAATAATTTGGTTCATCT
AGTCCGGTTTGTGGCAGTTGATCATCTTGATGGCGCATAGGTTCTAGTGG
TTGCTGCATAGCTTGCCGTTGCACGCCTTCGTGTTCTTCTTGAAATGGCA
TGACAGTTTCGTTTTCAAAATCTAAAGGTGGCACCCAGTCGTTGTCCAAA
GGCTGATAGTTCGTGTTTTGTTGATGCGATTGCTGTTGTTGTTGCTGTTG
TTGTCGTTGTTGTAGTTGTTGAGTGTTTTCCAAGTTGATAAGTGCTTTAT
CAATTGCATCAAAGCGTGTTTCCATCCACTGCATCACTTTGACCAAGTTG
CAATTACAATTTGGAATCCGTGTCATGTTCGGAGTGGATGCAATACTGAA
GGAAGGCATTGCTCCAGGAAGTGTCCAATTGTGCTCAACTGAGGTATTCG
ATTTGTTTCTCAGGAATGTGGCTTGTTCAGGTGTTATTGGTTTGATTGGC
TCAAGGTGAATTGTTTGTTCTGGAGTGTCGGGTTTCAAAGGTTCTGGAGT
GTCGGGTTTCAAAGGTTCTGGAGTGTTGGTTTTTGCTTTTTCTGGAGTGT
TGGGTTTTGCTGATTCTGGAGAGTTGGGTTTTGCTGATTCTGGAGTGTTG
GGTTTTGCTGATTCTGGAGAGTTGGGTTTTGCTGATTCTGGAGAGTTCGG
TTGTTCTGGTTGTTCTGGAGAGTTCGGTTGTTCTGGTTGTTCTGGAGAGT
TCGGTTGTTCTGGTTGTTCTTGAGTGTTTGGTTTCACAGGTTCTGGAGTG
ATAGGCTCTGCTGGTTCTGGAGTGGCGGGCTTTAATGGTTCTGGAGTGAG
TTCTGGAGTGACAGGCTTTATTGGTTCTGCAGTCTTTGGTGTCGTACGTT
CTAAAGTGTTGGGTTTTGGTGTTGTTTTTGCCCTGAGTTGTGTTTTTTGA
AGAGATTTGGATGGATCGAAACCGTCGTTGCCCATGCTGTTTGCAACTTG
CACTCGTCTTATCATAAACCCATTCACTTCCTTCATTTTTGCGTCTTTCT
TCAAATTGAATTTGTTGATTGCATCCCTTTCTGATTGACTCATCTCACGA
GGCTAGAAATGCATATACTTAAAATTGTAAATGTTATTCTTTTGGGCAAC
TTTTTTGATTAAATAATTTCAAAGGACAAATTTTTATCATTGAATCTTCA
TAATTTTTCCAAAACAGATTTAAAATTGAAATGAATTTTGAACTAATTTT
GACGAAGAGTCAATTCAATTTTTTTTTCAAATTCTCGCAAACCAGAAAAT
TTTTTAGAACTTATTTTGGCGAATCAACAATTTTTTTTAATTTTGAATAC
CCATGGCAGAATTAGATTTTCTATTAAAATTTCTTTCTCTTCCTTTAATG
TATTTTCTTTTATTTACTAGCTGTATTGATGGATCCTAAGAAGATTGCAA
ATCACCCCCAACCCAACGTATAAAGAATAAGAAGAGTAAAATCACTTGCT
TATAAAGGTAAATAATTTTAAGCTTGTCTGATCATGAAACTGTTTTAATT
TTATTTGAAATTGACATTGATTTGTGTCAAACGTAAAATTTGCAGTATTT
TTTTAGCTGTAGCCCTCTTTGAATCAAAGAAAAGTGGTTCTAATTAAAAT
CAAGAAAATTCTTTTACCGCTCTCTTTTCAATTTTCTACCTACCAGATAA
TTATTGACATTATTATACAGAAGAATTTTGAATACCAGGGTGTTTTTTTT
TTGACAAAATTTAAAATAGTACTTGTATTATTTTTTAGTTGCTGCAGTTG
ATGTTCAATGCTGGCACAAACGCTGAATAAAAACTTTATTTCGAAAGTCC
CTAATCTGGAAAAAGTAAGTTGTCTGTTTTTACCTCTGCAGGGCCACTAT
TGTCCACTTCACAGTCTTTTGACCTTGCTGCTTTTGCTTTGGCAACCTTG
GTTAATCTTTTCTTTGTTTTTTTGATGATCGGTTTCGCAACAGTTGGTTT
AGTACTTGCTGTTGATTTGGTCTTTGGTTTGACTGGTGTCTTTGCTACCT
CAGCATAGGTTGTTTTGGCTGATGCCTGAAAGTAAAGGTTTGATAAAATA
CTTCAGCATGTCTAAAAAAACCCATTCATGCTATGTCAGAAAGTTATCGA
CCATTAGAAAGGTAATTATAAGAAGAATACTTTTAGGATTTTTTAAAAAA
GATGAAGTTTTTTCTACTACTTCGAAAATCATGCCATGAGACAAGGGGCA
TACATTTGCTATTTATATTCATAGCTTCTCAAATATTGCTTTTCAGATAT
ATGTTGTGATATTTTTTGGAATTCTTGGATAAATGCCTTTCATTTGAGCC
ATATCTGAGCTTCTGATTTTAACTTGAATTTTCAAACGCCAGCAAAAGTG
AAAACGTCACATGGGACCAACAAATTAGTAAAAAAGTATCATCACTCGTT
TTTGTAATCTTATGGACCTTAATTATGTCTCAAAATAATTTGCAGCTGAG
GCAAAAATGATAACTTTTGATAGAATTCGAATTGAGTTGCGAGTTCGTGC
TCGTTGAAAAAATAAAAATGAAAGGAGTAAAAAATCAACTTTTTGTAGAA
ATGGGGTATAATCACCATTTTCACAGGGGTGATTCTTCAATCTTAGATCA
TAACTCCTGTGAAAATGGTAATTATACCCCATTTCTACAAGAAGTTTTTT
CATTTTCATTTTTCCTTTTTTTCCGTATTTTTTTGCTTGATAATATTCCA
CTCTAAAATATCTTTTCAACGAGCACAAGATCGCAACTTGATTTGAATTA
TATCAAAAGTTACAGCCATTTTTGACTCAGCTGCAAATTATTTTGAGACA
GACTTTAATTGACCATTTAAAAATTCTAATTCTAAAACAAGTCTGTACAC
GAAGAATTCTTTCAGAACATAGTTGGCTATAGATCACTAAACTTCAAAGT
GCTGTAACTTTTTAAGAGAGGTAAGGTGTTCAGTGAAGTTCAAATGTCTC
GCATTAAGATTCGGCATAATTAATGTATTCTACCCTTCTTGTTTTAGTGC
ATTGGGAGGAAGAAAACAACGAAAGAAGACAACGAAAGAAGACAACGTAT
ACGTCCACTCATCTTAACGTCTTAAATAAATTATTGTTATACCTTGGTGT
TGGTTTTTTTGGTTTTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021370XLOC_021370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036312-exon-sc0001439-1575043694:10743..10838TCONS_00036312-exon-sc0001439-1575043694:10743..10838Clytia hemisphaericaexon
TCONS_00036312-exon-sc0001439-1575043694:9105..9164TCONS_00036312-exon-sc0001439-1575043694:9105..9164Clytia hemisphaericaexon
TCONS_00036312-exon-sc0001439-1575043694:6532..6618TCONS_00036312-exon-sc0001439-1575043694:6532..6618Clytia hemisphaericaexon
TCONS_00036312-exon-sc0001439-1575043694:6175..6250TCONS_00036312-exon-sc0001439-1575043694:6175..6250Clytia hemisphaericaexon
TCONS_00036312-exon-sc0001439-1575043694:4870..4991TCONS_00036312-exon-sc0001439-1575043694:4870..4991Clytia hemisphaericaexon
TCONS_00036312-exon-sc0001439-1510915933:10743..10838TCONS_00036312-exon-sc0001439-1510915933:10743..10838Clytia hemisphaericaexon
TCONS_00036312-exon-sc0001439-1510915933:9105..9164TCONS_00036312-exon-sc0001439-1510915933:9105..9164Clytia hemisphaericaexon
TCONS_00036312-exon-sc0001439-1510915933:6532..6618TCONS_00036312-exon-sc0001439-1510915933:6532..6618Clytia hemisphaericaexon
TCONS_00036312-exon-sc0001439-1510915933:6175..6250TCONS_00036312-exon-sc0001439-1510915933:6175..6250Clytia hemisphaericaexon
TCONS_00036312-exon-sc0001439-1510915933:4870..4991TCONS_00036312-exon-sc0001439-1510915933:4870..4991Clytia hemisphaericaexon
TCONS_00036312-exon-sc0001439-1491911889:10743..10838TCONS_00036312-exon-sc0001439-1491911889:10743..10838Clytia hemisphaericaexon
TCONS_00036312-exon-sc0001439-1491911889:9105..9164TCONS_00036312-exon-sc0001439-1491911889:9105..9164Clytia hemisphaericaexon
TCONS_00036312-exon-sc0001439-1491911889:6532..6618TCONS_00036312-exon-sc0001439-1491911889:6532..6618Clytia hemisphaericaexon
TCONS_00036312-exon-sc0001439-1491911889:6175..6250TCONS_00036312-exon-sc0001439-1491911889:6175..6250Clytia hemisphaericaexon
TCONS_00036312-exon-sc0001439-1491911889:4870..4991TCONS_00036312-exon-sc0001439-1491911889:4870..4991Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001439supercontigsc0001439:4870..10838 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.270517	0.263796	0	0	0	0	0	0.3451	0	0	0.15493	0	0	0	0	0.0931859	0	0	0	0	0.147853	0	0	0	0	0.544005	0	0	0	0.172929
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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