TCONS_00036311 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036311
Unique NameTCONS_00036311
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036311 ID=TCONS_00036311|Name=TCONS_00036311|organism=Clytia hemisphaerica|type=transcript|length=1614bp
CTAAGGTTTTCATAAAAGCATTCTTTAGAGAGAGGGAGGGgcgtttttta
tcaaaaaagttctaaaaatagtttatggaaatttgaaaaatgaattacag
taccaatttaaaaaaattatagttAGAGCACCCACAATCTAATACAAAAC
AGAACTGTTAATTTATCCTAATATGCAATAATTAagtacgaaaaaaaatt
taaattcaaatatttctttctcATCAAGGTGGAAGAAGCAAGAAGACAGG
CAGCAAACTTTGAAGATGCCTTTGAAAAACACGAACCTTGCTCATTCAAA
GGCCTGGCCCATTACAGCTGGGATTATGCCCAGCAAACCCATTACCCATA
CAACCCACTTCAGCCGGGCCCGATTTTCTTCAAGACCCCAAGGAAATGTG
GGATATTTGGGATATGCAATGACGGCATAAATCTGCAGTATAATTATCTT
ATTGATGAGATTTGTACAACAGGCAAGGGTGCCAACGCTACCATCAGCTA
CCTTCATCACTTTTTAGAAACTTATGGGATGGGGGAAACTGATGCTTATT
TGCATGCTGATAATTGTTCAGgGCAGAACAAAAACAATCCATTCCTTTGG
TATCTGATGTGGCGTATTTTGAACGGTCTTCATGAGAAAATTGAATACAG
CTTTATGATAGCTGGACACACCAAATTTAGCTGTGACagGTGCTTTGGTa
gcttcaaaaagaaattacgTTCCACACGCGTTTCTTCAATTTATGAGATT
GCCGATGTCTGTGACAAGTCAAAATGCAATTTCTCAGTGCTGGTTGGTAA
CCACAATAAAGAGATGAATGTCCACACATACGACTGGACTacctattttg
aaaaagttctcaATTTCAAGACGATAAAGGACTTATTATCGTACCACCAA
TTTCGTATGTCAAAGGATGAACCTGGTATCGTCCACTGCTATGCATCCCT
CGATGATGAACCAACAACCGTTtccattttcaagaaaaatagtACAACTA
GCATTACACCAGTGTTGCCAAATATTGTTGAACCAAAAGGATTTNACCGT
TtccattttcaagaaaaatagtACAACTAGCATTACACCAGTGTTGCCAA
ATATTGTTGAACCAAAAGGATTTACCAAACAACGCACTGATTATCTCCGA
AAAGAAATTCGTCAACTCTGCCGTCCTGGAACAGAGGATTTAGTTGCACC
TTGATTGAAAGGATCTTCACGCTTATTTTATATTCAGTTTGTAATTACGG
TAGTGGCTaaaactttctgaagtttttgCAATTTATGAGTCAATTACAAC
AATTTCTAGCCATTTAAACTTTTCACTGATTGTGTCCTCTTCACTGCAGC
ATTGATTGAACcagtaaaaaaagaagaatgatggaattttttatcttcat
ataATTTTGATTAGTGATATTGTATGGTTTATTTAGTGTTCTTTGTTTTg
agtctaaaaataaaaatatcattaCTGTAAAAAGGATACGTGGACAAATA
AACAATATTTGTCGGTGTGGATGGTGTACTGATATAAATATTTTACAACC
GATATGAGCCAGTCTGGAAATAATGCAAAGCATACGTCAAGTGTGTTATA
TTGACAACATTTAC
Run BLAST on NCBI

protein sequence of TCONS_00036311-protein

>TCONS_00036311-protein ID=TCONS_00036311-protein|Name=TCONS_00036311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MGETDAYLHADNCSGQNKNNPFLWYLMWRILNGLHEKIEYSFMIAGHTKF
SCDRCFGSFKKKLRSTRVSSIYEIADVCDKSKCNFSVLVGNHNKEMNVHT
YDWTTYFEKVLNFKTIKDLLSYHQFRMSKDEPGIVHCYASLDDEPTTVSI
FKKNSTTSITPVLPNIVEPKGFXRFHFQEK
Run BLAST on NCBI

transcript from alignment at sc0001439:242..2782-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036311 ID=TCONS_00036311|Name=TCONS_00036311|organism=Clytia hemisphaerica|type=transcript|length=2541bp|location=Sequence derived from alignment at sc0001439:242..2782- (Clytia hemisphaerica)
CTAAGGTTTTCATAAAAGCATTCTTTAGAGAGAGGGAGGGGCGTTTTTTA
TCAAAAAAGTTCTAAAAATAGTTTATGGAAATTTGAAAAATGAATTACAG
TACCAATTTAAAAAAATTATAGTTAGAGCACCCACAATCTAATACAAAAC
AGAACTGTTAATTTATCCTAATATGCAATAATTAAGTACGAAAAAAAATT
TAAATTCAAATATTTCTTTCTCATCAAGGTGGAAGAAGCAAGAAGACAGG
CAGCAAACTTTGAAGATGCCTTTGAAAAACACGAACCTTGCTCATTCAAA
GGCCTGGCCCATTACAGCTGGGATTATGCCCAGCAAACCCATTACCCATA
CAACCCACTTCAGCCGGGCCCGATTTTCTTCAAGACCCCAAGGAAATGTG
GGATATTTGGGATATGCAATGACGGCATAAATCTGCAGTATAATTATCTT
ATTGATGAGATTTGTACAACAGGCAAGGGTGCCAACGCTACCATCAGCTA
CCTTCATCACTTTTTAGAAACTTATGGGATGGGGGAAACTGATGCTTATT
TGCATGCTGATAATTGTTCAGGTATAAAAATGCGAATAAAATTCCAATTC
CAATTATTTAGTTCTTTAGATTTTCAAAATAATCAAGCTTCAAATACAAT
AAAGTTCGAAAAAGTTATTTAGATTTATTTGGCCTATTTTCCTTACTTTG
AAAAATATTGAAATTGCTAAAAACTGAATCCAATAGCATTTTACCTCGTG
AATCAATCCAAATTTTGATACCCATCAAAATTGATACCCATCAAAATAAA
TCCACTTCATGAGGCTATATTAATTTATTTAATTTTAGGGCAGAACAAAA
ACAATCCATTCCTTTGGTATCTGATGTGGCGTATTTTGAACGGTCTTCAT
GAGAAAATTGAATACAGCTTTATGATAGCTGGACACACCAAATTTAGCTG
TGACAGGTATTTTCTTATTCTCATAAAAATATGAAAGATTTTGAACCTTA
ATTTTTCTTCTTTTTTTTTTTNACAGCTTTATGATAGCTGGACACACCAA
ATTTAGCTGTGACAGGTATTTTCTTATTCTCATAAAAATATGAAAGATTT
TGAACCTTAATTTTTCTATTTTTTTTGGACTCAATCCACAAATCTAGTTC
TGCAGGCATATGGACGTTTCAAATGCAACAGTGACAAATTTCAGTTAAAT
AGAAGGGAAGATTGAAATTGAAATTCATTTCATTAGATCTGTTATAAATT
CAAACCCATAATTTGCCTATGGGAAGTCTATGGGAAATATTACCTTTTAA
TTATATTCGTTTAAGAACACGCGGCGACATATTGAATAAATTACTCCAAG
TTACTCCTCATACATTACTTTCACTCAGCCAGTACAAATGGATAACTTAT
TCTATCTCTAGGTAACAGCTGTGTTGTAAGAGACAAATCAATGTGATGAC
GTTATCATTAAACAAATTTCTGCTGGAGTAATCAGTTATTCAAAAGACTG
CCGCATTCTCCTAAACAACTATTTCCATGAATTGAAATTCTCAAAATTTT
AGCTATGACTTTAATTTGGCAAAAATCACAAAATTTGAAGATTAAAATCT
ATCATTTCATTTCAAGGTGCTTTGGTAGCTTCAAAAAGAAATTACGTTCC
ACACGCGTTTCTTCAATTTATGAGATTGCCGATGTCTGTGACAAGTCAAA
ATGCAATTTCTCAGTGCTGGTTGGTAACCACAATAAAGAGATGAATGTCC
ACACATACGACTGGACTACCTATTTTGAAAAAGTTCTCAATTTCAAGACG
ATAAAGGACTTATTATCGTACCACCAATTTCGTATGTCAAAGGATGAACC
TGGTATCGTCCACTGCTATGCATCCCTCGATGATGAACCAACAACCGTTT
CCATTTTCAAGAAAAATAGTACAACTAGCATTACACCAGTGTTGCCAAAT
ATTGTTGAACCAAAAGGATTTNACCGTTTCCATTTTCAAGAAAAATAGTA
CAACTAGCATTACACCAGTGTTGCCAAATATTGTTGAACCAAAAGGATTT
ACCAAACAACGCACTGATTATCTCCGAAAAGAAATTCGTCAACTCTGCCG
TCCTGGAACAGAGGATTTAGTTGCACCTTGATTGAAAGGATCTTCACGCT
TATTTTATATTCAGTTTGTAATTACGGTAGTGGCTAAAACTTTCTGAAGT
TTTTGCAATTTATGAGTCAATTACAACAATTTCTAGCCATTTAAACTTTT
CACTGATTGTGTCCTCTTCACTGCAGCATTGATTGAACCAGTAAAAAAAG
AAGAATGATGGAATTTTTTATCTTCATATAATTTTGATTAGTGATATTGT
ATGGTTTATTTAGTGTTCTTTGTTTTGAGTCTAAAAATAAAAATATCATT
ACTGTAAAAAGGATACGTGGACAAATAAACAATATTTGTCGGTGTGGATG
GTGTACTGATATAAATATTTTACAACCGATATGAGCCAGTCTGGAAATAA
TGCAAAGCATACGTCAAGTGTGTTATATTGACAACATTTAC

Coding sequence (CDS) from alignment at sc0001439:242..2782-

>TCONS_00036311 ID=TCONS_00036311|Name=TCONS_00036311|organism=Clytia hemisphaerica|type=CDS|length=1629bp|location=Sequence derived from alignment at sc0001439:242..2782- (Clytia hemisphaerica)
GTGCTTTGGTAGCTTCAAAAAGAAATTACGTTCCACACGCGTTTCTTCAA
TTTATGAGATTGCCGATGTCTGTGACAAGTCAAAATGCAATTTCTCAGTG
CTGGTTGGTAACCACAATAAAGAGATGAATGTCCACACATACGACTGGAC
TACCTATTTTGAAAAAGTTCTCAATTTCAAGACGATAAAGGACTTATTAT
CGTACCACCAATTTCGTATGTCAAAGGATGAACCTGGTATCGTCCACTGC
TATGCATCCCTCGATGATGAACCAACAACCGTTTCCATTTTCAAGAAAAA
TAGTACAACTAGCATTACACCAGTGTTGCCAAATATTGTTGAACCAAAAG
GATTTNACCGTTTCCATTTTCAAGAAAAATAGGGCAGAACAAAAACAATC
CATTCCTTTGGTATCTGATGTGGCGTATTTTGAACGGTCTTCATGAGAAA
ATTGAATACAGCTTTATGATAGCTGGACACACCAAATTTAGCTGTGACAG
ATGGGGGAAACTGATGCTTATTTGCATGCTGATAATTGTTCAGGTGCTTT
GGTAGCTTCAAAAAGAAATTACGTTCCACACGCGTTTCTTCAATTTATGA
GATTGCCGATGTCTGTGACAAGTCAAAATGCAATTTCTCAGTGCTGGTTG
GTAACCACAATAAAGAGATGAATGTCCACACATACGACTGGACTACCTAT
TTTGAAAAAGTTCTCAATTTCAAGACGATAAAGGACTTATTATCGTACCA
CCAATTTCGTATGTCAAAGGATGAACCTGGTATCGTCCACTGCTATGCAT
CCCTCGATGATGAACCAACAACCGTTTCCATTTTCAAGAAAAATAGTACA
ACTAGCATTACACCAGTGTTGCCAAATATTGTTGAACCAAAAGGATTTNA
CCGTTTCCATTTTCAAGAAAAATAGGGCAGAACAAAAACAATCCATTCCT
TTGGTATCTGATGTGGCGTATTTTGAACGGTCTTCATGAGAAAATTGAAT
ACAGCTTTATGATAGCTGGACACACCAAATTTAGCTGTGACAGATGGGGG
AAACTGATGCTTATTTGCATGCTGATAATTGTTCAGGTGCTTTGGTAGCT
TCAAAAAGAAATTACGTTCCACACGCGTTTCTTCAATTTATGAGATTGCC
GATGTCTGTGACAAGTCAAAATGCAATTTCTCAGTGCTGGTTGGTAACCA
CAATAAAGAGATGAATGTCCACACATACGACTGGACTACCTATTTTGAAA
AAGTTCTCAATTTCAAGACGATAAAGGACTTATTATCGTACCACCAATTT
CGTATGTCAAAGGATGAACCTGGTATCGTCCACTGCTATGCATCCCTCGA
TGATGAACCAACAACCGTTTCCATTTTCAAGAAAAATAGTACAACTAGCA
TTACACCAGTGTTGCCAAATATTGTTGAACCAAAAGGATTTNACCGTTTC
CATTTTCAAGAAAAATAGGGCAGAACAAAAACAATCCATTCCTTTGGTAT
CTGATGTGGCGTATTTTGAACGGTCTTCATGAGAAAATTGAATACAGCTT
TATGATAGCTGGACACACCAAATTTAGCTGTGACAGATGGGGGAAACTGA
TGCTTATTTGCATGCTGATAATTGTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021369XLOC_021369Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036311-proteinTCONS_00036311-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036311-exon-sc0001439-1575043694:2212..2782TCONS_00036311-exon-sc0001439-1575043694:2212..2782Clytia hemisphaericaexon
TCONS_00036311-exon-sc0001439-1575043694:1827..1944TCONS_00036311-exon-sc0001439-1575043694:1827..1944Clytia hemisphaericaexon
TCONS_00036311-exon-sc0001439-1575043694:242..1166TCONS_00036311-exon-sc0001439-1575043694:242..1166Clytia hemisphaericaexon
TCONS_00036311-exon-sc0001439-1510915933:2212..2782TCONS_00036311-exon-sc0001439-1510915933:2212..2782Clytia hemisphaericaexon
TCONS_00036311-exon-sc0001439-1510915933:1827..1944TCONS_00036311-exon-sc0001439-1510915933:1827..1944Clytia hemisphaericaexon
TCONS_00036311-exon-sc0001439-1510915933:242..1166TCONS_00036311-exon-sc0001439-1510915933:242..1166Clytia hemisphaericaexon
TCONS_00036311-exon-sc0001439-1491911889:2212..2782TCONS_00036311-exon-sc0001439-1491911889:2212..2782Clytia hemisphaericaexon
TCONS_00036311-exon-sc0001439-1491911889:1827..1944TCONS_00036311-exon-sc0001439-1491911889:1827..1944Clytia hemisphaericaexon
TCONS_00036311-exon-sc0001439-1491911889:242..1166TCONS_00036311-exon-sc0001439-1491911889:242..1166Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001439supercontigsc0001439:242..2782 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0571811	0	0.321819	0.0933236	0.0356439	0.105686	0.045763	0	0.0805913	0.220643	0.116011	0.164824	0.0686817	0.0829653	0.0508405	0.0417241	0	0	0	0	0	0	0.0854056	0.0952445	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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