TCONS_00036307 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036307
Unique NameTCONS_00036307
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036307 ID=TCONS_00036307|Name=TCONS_00036307|organism=Clytia hemisphaerica|type=transcript|length=370bp
TTTGGGTTCTTTTCAAACAAATGGTCACTCTATTCCTCTCCAAATTATGC
GGaaattcgtcactttttcaaaaatgtcatcgGACAATgattttgataac
atttttatCGATGCTGAAGAAGATAACGACCGAAAACAGACCCCAAAAGT
TGATTTCAAAGAAGCTCTTTCAACACTGTACACGTCACAAATCGATAgct
cttgttttgaaaacgaaattgAGGTTTTGAGATCCAAAGGTCGGCAGGCA
AAGTTGGATAATGAAGTTATCAATTTACTTATTGAAATGTTTAATAATTT
TTGTGGTATTGGAATAACGAAAATTTCTATTCTAGCTAAAAGTGCTAGTC
GCATTTCAATTGGTAAACAG
Run BLAST on NCBI

protein sequence of TCONS_00036307-protein

>TCONS_00036307-protein ID=TCONS_00036307-protein|Name=TCONS_00036307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
LGSFQTNGHSIPLQIMRKFVTFSKMSSDNDFDNIFIDAEEDNDRKQTPKV
DFKEALSTLYTSQIDSSCFENEIEVLRSKGRQAKLDNEVINLLIEMFNNF
CGIGITKISILAKSASRISIGKQ
Run BLAST on NCBI

transcript from alignment at sc0001437:14252..14621

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036307 ID=TCONS_00036307|Name=TCONS_00036307|organism=Clytia hemisphaerica|type=transcript|length=370bp|location=Sequence derived from alignment at sc0001437:14252..14621 (Clytia hemisphaerica)
CTGTTTACCAATTGAAATGCGACTAGCACTTTTAGCTAGAATAGAAATTT
TCGTTATTCCAATACCACAAAAATTATTAAACATTTCAATAAGTAAATTG
ATAACTTCATTATCCAACTTTGCCTGCCGACCTTTGGATCTCAAAACCTc
aatttcgttttcaaaacaagagcTATCGATTTGTGACGTGTACAGTGTTG
AAAGAGCTTCTTTGAAATCAACTTTTGGGGTCTGTTTTCGGTCGTTATCT
TCTTCAGCATCGataaaaatgttatcaaaatcATTGTCcgatgacatttt
tgaaaaagtgacgaatttCCGCATAATTTGGAGAGGAATAGAGTGACCAT
TTGTTTGAAAAGAACCCAAA

Coding sequence (CDS) from alignment at sc0001437:14252..14621

>TCONS_00036307 ID=TCONS_00036307|Name=TCONS_00036307|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at sc0001437:14252..14621 (Clytia hemisphaerica)
CTGTTTACCAATTGAAATGCGACTAGCACTTTTAGCTAGAATAGAAATTT
TCGTTATTCCAATACCACAAAAATTATTAAACATTTCAATAAGTAAATTG
ATAACTTCATTATCCAACTTTGCCTGCCGACCTTTGGATCTCAAAACCTc
aatttcgttttcaaaacaagagcTATCGATTTGTGACGTGTACAGTGTTG
AAAGAGCTTCTTTGAAATCAACTTTTGGGGTCTGTTTTCGGTCGTTATCT
TCTTCAGCATCGataaaaatgttatcaaaatcATTGTCcgatgacatttt
tgaaaaagtgacgaatttCCGCATAATTTGGAGAGGAATAGAGTGACCAT
TTGTTTGAAAAGAACCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021366XLOC_021366Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036307-exon-sc0001437-1491911889:14252..14621TCONS_00036307-exon-sc0001437-1491911889:14252..14621Clytia hemisphaericaexon
TCONS_00036307-exon-sc0001437-1510915933:14252..14621TCONS_00036307-exon-sc0001437-1510915933:14252..14621Clytia hemisphaericaexon
TCONS_00036307-exon-sc0001437-1575043694:14252..14621TCONS_00036307-exon-sc0001437-1575043694:14252..14621Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036307-proteinTCONS_00036307-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001437supercontigsc0001437:14252..14621 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.594332	0	0.283306	0	0	0.460019	0	0	0	0	1.3764	0.402841	0	0	0	0	0.213055	0.311763	0	0.459407	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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