TCONS_00036304 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036304
Unique NameTCONS_00036304
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length855

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036304 ID=TCONS_00036304|Name=TCONS_00036304|organism=Clytia hemisphaerica|type=transcript|length=855bp
CATGCATTGTCAGATGTGGCTGCCTTCATTCCAAGAAGCGTGAGAAGAAA
CTGAAAACAGAAGAGTCAAGTCATCACCTAAAGAGCGAAACGCAATATGA
GACCTAAGATTCAAGACGTGCAACGAGTATATATGGTTATAAATTTCTTC
CTTATTGGGCAGGGCTATTAAATCGCATGCCAACTCGTCAGAAAATTACC
TGCTTTCCATTCGAACGGATTTTCGCTGGTTTGGCTTGACGAAAGTACGC
TGGCTTGGCTTGACGAAATAGCGCTGGATTGGCTTGACGAAAGATCGCTG
GCTTGGCTTGACGAAATAGCGCTGGATTGGCTCGACGAAAGAATTGAACA
ATCAGACCGTGATTCACTCATGGAAAGTTCCGTTTCTTCCGTAGAAGGTG
ATGAAAGATGTGCCGGAAGTTTCTCCGACCACGAAGATGATCCTAAGTGA
AAAATGTTATTATATATTTGAAAGTActtgtatatttttttgaattcccG
ATTAGTTGATTCAAATCTGGCAATTTCAGGCAAATTTAGCTAAATTAATC
TCAGTTGATAAACTAGCCTCCCGCTTGATAACTTAATaagttttcgattt
tttccaaccctcaGACCTTGTCAGATCCCCCGTTCGACGGGTTTGGTTAT
TAAAATAgggattgggcttttccagaaaaaattcgttcatggggggtgga
ggatatattatttattctgtgatctacccctggacatttcaatttttcac
cccctggacacgtgttttaccctggacaagcatcaagttgaccccctgga
cacaaatatttacccctggacatcgcagattcaccccatggacatggctg
ttttt
Run BLAST on NCBI

transcript from alignment at sc0001437:33157..35046-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036304 ID=TCONS_00036304|Name=TCONS_00036304|organism=Clytia hemisphaerica|type=transcript|length=1890bp|location=Sequence derived from alignment at sc0001437:33157..35046- (Clytia hemisphaerica)
CATGCATTGTCAGATGTGGCTGCCTTCATTCCAAGAAGCGTGAGAAGAAA
CTGAAAACAGAAGAGGTAATTTCATTAATTCTTTTAAAGATTCTTTCACA
TTTTGGGATTTTCTTTAAGATATTTTCGGAATTTTGGAAATTTTTGAGGT
TAAGTTTTTTGGGATTTTTAGGCATTATTGAAAAAGTGTGCAAGATTTGT
TCCAGTGACTTGGCCCTTGTAAGAATAATAACGAAAATGCTGGGGCCTAC
TTTGTAATCCCCACCAATCAACAAATCGACACTTAATTCCTTTCCATCCA
CAGTTAATTTTGGCTCCTTTGCAATCTTGTTTACATCTTCTATCAAATCA
TGGAAACTTTCTTTTATACAGTCGTAGGATTCACTTGCCATTCCCACACC
AACAGCATTATTCCCTACAAAAATAGACATTACATGTTTTTTTATAAGCA
AGTGTATGCCTGAGCCAAGTTTTTAGTGAAATTAGATTTTACTCCTCGTG
AGATGGAGAAAATGCTTTAAAGATCCTTAATTTATTATCAGAACAATATT
GTCAGAGTAAGTTTCTCACCAGAGCTCTTATAGAATGAGCCAGACTCTTC
AATGATTGAGTAGGACATAACAACCAAATTTGAATGCCGTGTCAGTTTGG
TGCCATCTCCACTGATTTTCAACTAGAGAAAGACAAATGATATCATTACC
TAGCAAAGACACTTAAGTCAAAAACATTTATTGCAAATCTATGGAAACGA
CTTTCTTTTCTTCAGTTTAATTTGAAATCTGACATTTTTGGATTTACTCT
CATACATTTTTAGTAAACTGTTAGTAGTTAAGGCTTTAAAGAAACTAACC
ATGATATTATTTTCAGCAGACCTGACCCTTTTATCTGTTTTTAATTCATC
AATTAAACTCATTTGAGCTCCAGCACTATCCCCAGGTGTCTTTTGGACGT
CAAAGCTTTTTGAAATTTCGCGTTGCATATCTTCCACCAAATAAGATCTT
GGCAAACCAAATGCGATCTGAGACAGTTCATGATATGCTTTGTTGGAAAT
CATCCATCTGTCCTTCACGTATATGACAGCTTTCATTTTCTCTATTTCAG
TCAAGTCATCACCTAAAGAGCGAAACGCAATATGAGACCTAAGATTCAAG
ACGTGCAACGAGTATATATGGTTATAAATTTCTTCCTTATTGGGCAGGGC
TATTAAATCGCATGCCAACTCGTCAGAAAATTACCTGCTTTCCATTCGAA
CGGATTTTCGCTGGTTTGGCTTGACGAAAGTACGCTGGCTTGGCTTGACG
AAATAGCGCTGGATTGGCTTGACGAAAGATCGCTGGCTTGGCTTGACGAA
ATAGCGCTGGATTGGCTCGACGAAAGAATTGAACAATCAGACCGTGATTC
ACTCATGGAAAGTTCCGTTTCTTCCGTAGAAGGTGATGAAAGATGTGCCG
GAAGTTTCTCCGACCACGAAGATGATCCTAAGTGAAAAATGTTATTATAT
ATTTGAAAGTACTTGTATATTTTTTTGAATTCCCGATTAGTTGATTCAAA
TCTGGCAATTTCAGGCAAATTTAGCTAAATTAATCTCAGTTGATAAACTA
GCCTCCCGCTTGATAACTTAATAAGTTTTCGATTTTTTCCAACCCTCAGA
CCTTGTCAGATCCCCCGTTCGACGGGTTTGGTTATTAAAATAGGGATTGG
GCTTTTCCAGAAAAAATTCGTTCATGGGGGGTGGAGGATATATTATTTAT
TCTGTGATCTACCCCTGGACATTTCAATTTTTCACCCCCTGGACACGTGT
TTTACCCTGGACAAGCATCAAGTTGACCCCCTGGACACAAATATTTACCC
CTGGACATCGCAGATTCACCCCATGGACATGGCTGTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021363XLOC_021363Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036304-exon-sc0001437-1575043694:34982..35046TCONS_00036304-exon-sc0001437-1575043694:34982..35046Clytia hemisphaericaexon
TCONS_00036304-exon-sc0001437-1575043694:33157..33946TCONS_00036304-exon-sc0001437-1575043694:33157..33946Clytia hemisphaericaexon
TCONS_00036304-exon-sc0001437-1510915933:34982..35046TCONS_00036304-exon-sc0001437-1510915933:34982..35046Clytia hemisphaericaexon
TCONS_00036304-exon-sc0001437-1510915933:33157..33946TCONS_00036304-exon-sc0001437-1510915933:33157..33946Clytia hemisphaericaexon
TCONS_00036304-exon-sc0001437-1491911889:34982..35046TCONS_00036304-exon-sc0001437-1491911889:34982..35046Clytia hemisphaericaexon
TCONS_00036304-exon-sc0001437-1491911889:33157..33946TCONS_00036304-exon-sc0001437-1491911889:33157..33946Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001437supercontigsc0001437:33157..35046 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0942509	0.109829	0.201831	0.442377	0.411608	0.366842	0.166433	0.300702	0	0	0.489843	0.37534	0	0.172394	0.164573	0.362191	0.241133	0.243119	0	0.258043	0	0.429354	0.433668	0.490926	1.40547	0.981567	0.262354	0.10328	0.513065	0.267158
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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