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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036302 ID=TCONS_00036302|Name=TCONS_00036302|organism=Clytia hemisphaerica|type=transcript|length=1220bp
ATTTTCTTGACCTCCTTTTTCGAGATATACAACAGAATGATGAATACCTC
TCGGACATTTACGATGGCAAAATGTATAAAACATTTAAAGATTTagatgg
aaattttttcttcaatgacAAACGCAACATCGGATTGATGCTAAATTTTG
ACTTCTTTGATCCTTTCAAAAGGTCAAAGTACTCTTTAGGTGTCTTATAT
GCAGTGATAATTAATCTTCCAAGGGAATCACGCTTTTTATGGGAGAACGT
CCTGGTAATCGCTGTTGTTCCTGGTCCTGAAGAACCAAAGCTAAGTATCA
ACAGCTTCCTTGAGCCtttggttgatgaactgataGAAGGCTGGTACTCT
GGGATGAGAATAGAAGAGAGTGATGGACTTTGTTCGCTATACAAGTTTGC
TGTTGTTTGCATTTCCAGCGACCTCCCAGCGTTACGAAAAATTGGTGGAT
TTTTGTCCTTCAGGGCTAAGCTAGGATGTAGTAAATGTTTGACGATTTTT
ACATGGGAGCAAAAGGCTAATGAAAAGAAAGGAACACCTGCAGTCGAAAG
AAACCTTGGCAAGTTTGAGTCTAATAAATGGACTTCAAGAAAAGGTGATG
AGCACAAGAGGCTAGGATTCAAAATTGCAAAAGCGAAAACGTTGGATGAA
ACTAAAACAGAAGAATCAAAACATGGTGTTCGCTATTCCGAACTTTTCCG
ACTTCCGTATTTTGATCCAATTAAGATGCATGTTGTTGACCCAATGCATA
ACCTTTTTCTAGgaATCGCCCATCACGTCTTTGACACCTGGATGGAGACA
GGAACCATTCAAGCAAAGatccattttcaaaaaattaatgcaaGACAAGA
AAGAATTCGTGTTCCATCAGATATGGGTCGTATTAGCACGTCGGTTTGTA
GCCATTACAAAAACATGAAGGCTGATGAGTGGAAACATTGGGCTCTGATA
TATTCTACTTACTGTCTTAGGGGAATCATTCCTGATAAGGATTTGCGAAT
TTGGACAAAATTTGTAAACGCATGTCACATGATATGTGTCCCTGTTGTTC
GTTTGGCTGAAGTTGAAAAAGCCCACAAACTGCTGCAAGAATTTGCTAAA
GAGTTCGAAGCCCGGTACAGCAGCAAATTTACGGTGCCGAACATGCATAT
GATGCTCCATCTTAAGGAAGGCATCGAGGATTATGGACCATTGTATgctt
tttggtgttttggatTCGAG Run BLAST on NCBI protein sequence of TCONS_00036302-protein >TCONS_00036302-protein ID=TCONS_00036302-protein|Name=TCONS_00036302-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
FLDLLFRDIQQNDEYLSDIYDGKMYKTFKDLDGNFFFNDKRNIGLMLNFD
FFDPFKRSKYSLGVLYAVIINLPRESRFLWENVLVIAVVPGPEEPKLSIN
SFLEPLVDELIEGWYSGMRIEESDGLCSLYKFAVVCISSDLPALRKIGGF
LSFRAKLGCSKCLTIFTWEQKANEKKGTPAVERNLGKFESNKWTSRKGDE
HKRLGFKIAKAKTLDETKTEESKHGVRYSELFRLPYFDPIKMHVVDPMHN
LFLGIAHHVFDTWMETGTIQAKIHFQKINARQERIRVPSDMGRISTSVCS
HYKNMKADEWKHWALIYSTYCLRGIIPDKDLRIWTKFVNACHMICVPVVR
LAEVEKAHKLLQEFAKEFEARYSSKFTVPNMHMMLHLKEGIEDYGPLYAF
WCFGFE Run BLAST on NCBI transcript from alignment at sc0001437:15037..16731- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036302 ID=TCONS_00036302|Name=TCONS_00036302|organism=Clytia hemisphaerica|type=transcript|length=1695bp|location=Sequence derived from alignment at sc0001437:15037..16731- (Clytia hemisphaerica)
ATTTTCTTGACCTCCTTTTTCGAGATATACAACAGAATGATGAATACCTC
TCGGACATTTACGATGGCAAAATGTATAAAACATTTAAAGATTTAGATGG
AAATTTTTTCTTCAATGACAAACGCAACATCGGATTGATGCTAAATTTTG
ACTTCTTTGATCCTTTCAAAAGGTCAAAGTACTCTTTAGGTGTCTTATAT
GCAGTGATAATTAATCTTCCAAGGGAATCACGCTTTTTATGGGAGAACGT
CCTGGTAATCGCTGTTGTTCCTGGTCCTGAAGAACCAAAGCTAAGTATCA
ACAGCTTCCTTGAGCCTTTGGTTGATGAACTGATAGAAGGCTGGTACTCT
GGGATGAGAATAGAAGAGAGTGATGGACTTTGTTCGCTATACAAGTTTGC
TGTTGTTTGCATTTCCAGCGACCTCCCAGCGTTACGAAAAATTGGTGGAT
TTTTGTCCTTCAGGGCTAAGCTAGGTATAAGTTATTTTTACAGCTATTTT
TTCAAACACTTCCCATGTTAGTTATGCTTGAGTGGTGAGAACTTACGCGT
TTTTAAAATGTGATCTGTGTGCTGGTTTCTTTGTGTTACCCCTTCTTTGT
GATACATCGTTTGACATTGGCTTGCCTTATCTCTCTCATTTCAGGATGTA
GTAAATGTTTGACGATTTTTACATGGGAGCAAAAGGCTAATGAAAAGAAA
GGAACACCTGCAGTCGAAAGAAACCTTGGCAAGTTTGAGTCTAATAAATG
GACTTCAAGAAAAGGTGATGAGCACAAGAGGCTAGGATTCAAAATTGCAA
AAGCGAAAACGTTGGATGAAACTAAAACAGAAGAATCAAAACATGGTGTT
CGCTATTCCGAACTTTTCCGACTTCCGTATTTTGATCCAATTAAGATGCA
TGTTGTTGACCCAATGCATAACCTTTTTCTAGGTATGATGAATTTAAAAT
TATAATCTTTCATGCATGAAATGGTGACAACTAACTTCCGATTTTTTGTG
TAGAAGTGTCTGAAGAGAAAAACGTAAATTTTTAGCCTGAAAGGTTTATT
TAGTTTTTCTTTTACTAAATTGATGATAGCTCCTGTTTTCGATATTCAAT
TTTCAGGAATCGCCCATCACGTCTTTGACACCTGGATGGAGACAGGAACC
ATTCAAGCAAAGATCCATTTTCAAAAAATTAATGCAAGACAAGAAAGAAT
TCGTGTTCCATCAGATATGGGTCGTATTAGCACGTCGGTTTGTAGCCATT
ACAAAAACATGAAGGCTGATGAGTGGAAACATTGGGCTCTGATATATTCT
ACTTACTGTCTTAGGGGTATGTTTGCTGTGTATATTCTCTATTGTTTTCC
GGTTTTTGAAAAGTATTGATTTCGTTTTATGACATCGAGTCTTTTGAATC
AAATGATTGATTATCTAATTTATTTATATTTGTATTTTTGGTTTTAGGAA
TCATTCCTGATAAGGATTTGCGAATTTGGACAAAATTTGTAAACGCATGT
CACATGATATGTGTCCCTGTTGTTCGTTTGGCTGAAGTTGAAAAAGCCCA
CAAACTGCTGCAAGAATTTGCTAAAGAGTTCGAAGCCCGGTACAGCAGCA
AATTTACGGTGCCGAACATGCATATGATGCTCCATCTTAAGGAAGGCATC
GAGGATTATGGACCATTGTATGCTTTTTGGTGTTTTGGATTCGAG Coding sequence (CDS) from alignment at sc0001437:15037..16731- >TCONS_00036302 ID=TCONS_00036302|Name=TCONS_00036302|organism=Clytia hemisphaerica|type=CDS|length=4872bp|location=Sequence derived from alignment at sc0001437:15037..16731- (Clytia hemisphaerica)
GAATCATTCCTGATAAGGATTTGCGAATTTGGACAAAATTTGTAAACGCA
TGTCACATGATATGTGTCCCTGTTGTTCGTTTGGCTGAAGTTGAAAAAGC
CCACAAACTGCTGCAAGAATTTGCTAAAGAGTTCGAAGCCCGGTACAGCA
GCAAATTTACGGTGCCGAACATGCATATGATGCTCCATCTTAAGGAAGGC
ATCGAGGATTATGGACCATTGTATGCTTTTTGGTGTTTTGGATTCGAGGA
ATCGCCCATCACGTCTTTGACACCTGGATGGAGACAGGAACCATTCAAGC
AAAGATCCATTTTCAAAAAATTAATGCAAGACAAGAAAGAATTCGTGTTC
CATCAGATATGGGTCGTATTAGCACGTCGGTTTGTAGCCATTACAAAAAC
ATGAAGGCTGATGAGTGGAAACATTGGGCTCTGATATATTCTACTTACTG
TCTTAGGGGATGTAGTAAATGTTTGACGATTTTTACATGGGAGCAAAAGG
CTAATGAAAAGAAAGGAACACCTGCAGTCGAAAGAAACCTTGGCAAGTTT
GAGTCTAATAAATGGACTTCAAGAAAAGGTGATGAGCACAAGAGGCTAGG
ATTCAAAATTGCAAAAGCGAAAACGTTGGATGAAACTAAAACAGAAGAAT
CAAAACATGGTGTTCGCTATTCCGAACTTTTCCGACTTCCGTATTTTGAT
CCAATTAAGATGCATGTTGTTGACCCAATGCATAACCTTTTTCTAGTTTC
TTGACCTCCTTTTTCGAGATATACAACAGAATGATGAATACCTCTCGGAC
ATTTACGATGGCAAAATGTATAAAACATTTAAAGATTTAGATGGAAATTT
TTTCTTCAATGACAAACGCAACATCGGATTGATGCTAAATTTTGACTTCT
TTGATCCTTTCAAAAGGTCAAAGTACTCTTTAGGTGTCTTATATGCAGTG
ATAATTAATCTTCCAAGGGAATCACGCTTTTTATGGGAGAACGTCCTGGT
AATCGCTGTTGTTCCTGGTCCTGAAGAACCAAAGCTAAGTATCAACAGCT
TCCTTGAGCCTTTGGTTGATGAACTGATAGAAGGCTGGTACTCTGGGATG
AGAATAGAAGAGAGTGATGGACTTTGTTCGCTATACAAGTTTGCTGTTGT
TTGCATTTCCAGCGACCTCCCAGCGTTACGAAAAATTGGTGGATTTTTGT
CCTTCAGGGCTAAGCTAGGAATCATTCCTGATAAGGATTTGCGAATTTGG
ACAAAATTTGTAAACGCATGTCACATGATATGTGTCCCTGTTGTTCGTTT
GGCTGAAGTTGAAAAAGCCCACAAACTGCTGCAAGAATTTGCTAAAGAGT
TCGAAGCCCGGTACAGCAGCAAATTTACGGTGCCGAACATGCATATGATG
CTCCATCTTAAGGAAGGCATCGAGGATTATGGACCATTGTATGCTTTTTG
GTGTTTTGGATTCGAGGAATCGCCCATCACGTCTTTGACACCTGGATGGA
GACAGGAACCATTCAAGCAAAGATCCATTTTCAAAAAATTAATGCAAGAC
AAGAAAGAATTCGTGTTCCATCAGATATGGGTCGTATTAGCACGTCGGTT
TGTAGCCATTACAAAAACATGAAGGCTGATGAGTGGAAACATTGGGCTCT
GATATATTCTACTTACTGTCTTAGGGGATGTAGTAAATGTTTGACGATTT
TTACATGGGAGCAAAAGGCTAATGAAAAGAAAGGAACACCTGCAGTCGAA
AGAAACCTTGGCAAGTTTGAGTCTAATAAATGGACTTCAAGAAAAGGTGA
TGAGCACAAGAGGCTAGGATTCAAAATTGCAAAAGCGAAAACGTTGGATG
AAACTAAAACAGAAGAATCAAAACATGGTGTTCGCTATTCCGAACTTTTC
CGACTTCCGTATTTTGATCCAATTAAGATGCATGTTGTTGACCCAATGCA
TAACCTTTTTCTAGTTTCTTGACCTCCTTTTTCGAGATATACAACAGAAT
GATGAATACCTCTCGGACATTTACGATGGCAAAATGTATAAAACATTTAA
AGATTTAGATGGAAATTTTTTCTTCAATGACAAACGCAACATCGGATTGA
TGCTAAATTTTGACTTCTTTGATCCTTTCAAAAGGTCAAAGTACTCTTTA
GGTGTCTTATATGCAGTGATAATTAATCTTCCAAGGGAATCACGCTTTTT
ATGGGAGAACGTCCTGGTAATCGCTGTTGTTCCTGGTCCTGAAGAACCAA
AGCTAAGTATCAACAGCTTCCTTGAGCCTTTGGTTGATGAACTGATAGAA
GGCTGGTACTCTGGGATGAGAATAGAAGAGAGTGATGGACTTTGTTCGCT
ATACAAGTTTGCTGTTGTTTGCATTTCCAGCGACCTCCCAGCGTTACGAA
AAATTGGTGGATTTTTGTCCTTCAGGGCTAAGCTAGGAATCATTCCTGAT
AAGGATTTGCGAATTTGGACAAAATTTGTAAACGCATGTCACATGATATG
TGTCCCTGTTGTTCGTTTGGCTGAAGTTGAAAAAGCCCACAAACTGCTGC
AAGAATTTGCTAAAGAGTTCGAAGCCCGGTACAGCAGCAAATTTACGGTG
CCGAACATGCATATGATGCTCCATCTTAAGGAAGGCATCGAGGATTATGG
ACCATTGTATGCTTTTTGGTGTTTTGGATTCGAGGAATCGCCCATCACGT
CTTTGACACCTGGATGGAGACAGGAACCATTCAAGCAAAGATCCATTTTC
AAAAAATTAATGCAAGACAAGAAAGAATTCGTGTTCCATCAGATATGGGT
CGTATTAGCACGTCGGTTTGTAGCCATTACAAAAACATGAAGGCTGATGA
GTGGAAACATTGGGCTCTGATATATTCTACTTACTGTCTTAGGGGATGTA
GTAAATGTTTGACGATTTTTACATGGGAGCAAAAGGCTAATGAAAAGAAA
GGAACACCTGCAGTCGAAAGAAACCTTGGCAAGTTTGAGTCTAATAAATG
GACTTCAAGAAAAGGTGATGAGCACAAGAGGCTAGGATTCAAAATTGCAA
AAGCGAAAACGTTGGATGAAACTAAAACAGAAGAATCAAAACATGGTGTT
CGCTATTCCGAACTTTTCCGACTTCCGTATTTTGATCCAATTAAGATGCA
TGTTGTTGACCCAATGCATAACCTTTTTCTAGTTTCTTGACCTCCTTTTT
CGAGATATACAACAGAATGATGAATACCTCTCGGACATTTACGATGGCAA
AATGTATAAAACATTTAAAGATTTAGATGGAAATTTTTTCTTCAATGACA
AACGCAACATCGGATTGATGCTAAATTTTGACTTCTTTGATCCTTTCAAA
AGGTCAAAGTACTCTTTAGGTGTCTTATATGCAGTGATAATTAATCTTCC
AAGGGAATCACGCTTTTTATGGGAGAACGTCCTGGTAATCGCTGTTGTTC
CTGGTCCTGAAGAACCAAAGCTAAGTATCAACAGCTTCCTTGAGCCTTTG
GTTGATGAACTGATAGAAGGCTGGTACTCTGGGATGAGAATAGAAGAGAG
TGATGGACTTTGTTCGCTATACAAGTTTGCTGTTGTTTGCATTTCCAGCG
ACCTCCCAGCGTTACGAAAAATTGGTGGATTTTTGTCCTTCAGGGCTAAG
CTAGGAATCATTCCTGATAAGGATTTGCGAATTTGGACAAAATTTGTAAA
CGCATGTCACATGATATGTGTCCCTGTTGTTCGTTTGGCTGAAGTTGAAA
AAGCCCACAAACTGCTGCAAGAATTTGCTAAAGAGTTCGAAGCCCGGTAC
AGCAGCAAATTTACGGTGCCGAACATGCATATGATGCTCCATCTTAAGGA
AGGCATCGAGGATTATGGACCATTGTATGCTTTTTGGTGTTTTGGATTCG
AGGAATCGCCCATCACGTCTTTGACACCTGGATGGAGACAGGAACCATTC
AAGCAAAGATCCATTTTCAAAAAATTAATGCAAGACAAGAAAGAATTCGT
GTTCCATCAGATATGGGTCGTATTAGCACGTCGGTTTGTAGCCATTACAA
AAACATGAAGGCTGATGAGTGGAAACATTGGGCTCTGATATATTCTACTT
ACTGTCTTAGGGGATGTAGTAAATGTTTGACGATTTTTACATGGGAGCAA
AAGGCTAATGAAAAGAAAGGAACACCTGCAGTCGAAAGAAACCTTGGCAA
GTTTGAGTCTAATAAATGGACTTCAAGAAAAGGTGATGAGCACAAGAGGC
TAGGATTCAAAATTGCAAAAGCGAAAACGTTGGATGAAACTAAAACAGAA
GAATCAAAACATGGTGTTCGCTATTCCGAACTTTTCCGACTTCCGTATTT
TGATCCAATTAAGATGCATGTTGTTGACCCAATGCATAACCTTTTTCTAG
TTTCTTGACCTCCTTTTTCGAGATATACAACAGAATGATGAATACCTCTC
GGACATTTACGATGGCAAAATGTATAAAACATTTAAAGATTTAGATGGAA
ATTTTTTCTTCAATGACAAACGCAACATCGGATTGATGCTAAATTTTGAC
TTCTTTGATCCTTTCAAAAGGTCAAAGTACTCTTTAGGTGTCTTATATGC
AGTGATAATTAATCTTCCAAGGGAATCACGCTTTTTATGGGAGAACGTCC
TGGTAATCGCTGTTGTTCCTGGTCCTGAAGAACCAAAGCTAAGTATCAAC
AGCTTCCTTGAGCCTTTGGTTGATGAACTGATAGAAGGCTGGTACTCTGG
GATGAGAATAGAAGAGAGTGATGGACTTTGTTCGCTATACAAGTTTGCTG
TTGTTTGCATTTCCAGCGACCTCCCAGCGTTACGAAAAATTGGTGGATTT
TTGTCCTTCAGGGCTAAGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036302-exon-sc0001437-1575043694:16258..16731 | TCONS_00036302-exon-sc0001437-1575043694:16258..16731 | Clytia hemisphaerica | exon |
| TCONS_00036302-exon-sc0001437-1575043694:15800..16087 | TCONS_00036302-exon-sc0001437-1575043694:15800..16087 | Clytia hemisphaerica | exon |
| TCONS_00036302-exon-sc0001437-1575043694:15416..15625 | TCONS_00036302-exon-sc0001437-1575043694:15416..15625 | Clytia hemisphaerica | exon |
| TCONS_00036302-exon-sc0001437-1575043694:15037..15284 | TCONS_00036302-exon-sc0001437-1575043694:15037..15284 | Clytia hemisphaerica | exon |
| TCONS_00036302-exon-sc0001437-1510915933:16258..16731 | TCONS_00036302-exon-sc0001437-1510915933:16258..16731 | Clytia hemisphaerica | exon |
| TCONS_00036302-exon-sc0001437-1510915933:15800..16087 | TCONS_00036302-exon-sc0001437-1510915933:15800..16087 | Clytia hemisphaerica | exon |
| TCONS_00036302-exon-sc0001437-1510915933:15416..15625 | TCONS_00036302-exon-sc0001437-1510915933:15416..15625 | Clytia hemisphaerica | exon |
| TCONS_00036302-exon-sc0001437-1510915933:15037..15284 | TCONS_00036302-exon-sc0001437-1510915933:15037..15284 | Clytia hemisphaerica | exon |
| TCONS_00036302-exon-sc0001437-1491911889:16258..16731 | TCONS_00036302-exon-sc0001437-1491911889:16258..16731 | Clytia hemisphaerica | exon |
| TCONS_00036302-exon-sc0001437-1491911889:15800..16087 | TCONS_00036302-exon-sc0001437-1491911889:15800..16087 | Clytia hemisphaerica | exon |
| TCONS_00036302-exon-sc0001437-1491911889:15416..15625 | TCONS_00036302-exon-sc0001437-1491911889:15416..15625 | Clytia hemisphaerica | exon |
| TCONS_00036302-exon-sc0001437-1491911889:15037..15284 | TCONS_00036302-exon-sc0001437-1491911889:15037..15284 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001437 | supercontig | sc0001437:15037..16731 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004242 | Transposase_21 |
Blast
The following BLAST results are available for this feature:
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