TCONS_00036299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036299
Unique NameTCONS_00036299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length960

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036299 ID=TCONS_00036299|Name=TCONS_00036299|organism=Clytia hemisphaerica|type=transcript|length=960bp
aaaaacagccatgtccatggggtgaatctgcgatgtccaggggtaaatat
ttgtgtccagggggtcaacttgatgcttgtccagggtaaaacacgtgtcc
agggggtgaaaaattgaaatgtccaggggtagatcacagaataaataata
tatcctccaccccccatgaacgaattttttctggaaaagcccaatcccTA
TTTTAATAACCAAACCCGTCGAACGGGGGATCTGACAAGGTCtgagggtt
ggaaaaaatcgaaaacttATTAAGTTATCAAGCGGGAGGCTAGTTTATCA
ACTGAGATTAATTTAGCTAAATTTGCCTGAAATTGCCAGATTTGAATCAA
CTAATCgggaattcaaaaaaatatacaagTACTTTCAAATATATAATAAC
ATTTTTCACTTAGGATCATCTTCGTGGTCGGAGAAACTTCCGGCACATCT
TTCATCACCTTCTACGGAAGAAACGGAACTTTCCATGAGTGAATCACGGT
CTGATTGTTCAATTCTTTCGTCGAGCCAATCCAGCGCTATTTCGTCAAGC
CAAGCCAGCGATCTTTCGTCAAGCCAATCCAGCGCTATTTCGTCAAGCCA
AGCCAGCGTACTTTCGTCAAGCCAAACCAGCGAAAATCCGTTCGAATGGA
AAGCAGGTGATGACTTGACTGAAATAGAGAAAATGAAAGCTGTCATATAC
GTGAAGGACAGATGGATGATTTCCAACAAAGCATATCATGAACTGTCTCA
GATCGCATTTGGTTTGCCAAGATCTTATTTGGTGGAAGATATGCAACGcg
aaatttcaaaaagctttgaCGTCCAAAAGACACCTGGGGATAGTGCTGGA
GCTCAAATGAGTTTAATTGATGAATTAAAAACAGATAAAAGGGTCAGGTC
TGCTGAAAATAATATCATGTTGAAAATCAGTGGAGATGGCACCAAACTGA
CACGGCATTC
Run BLAST on NCBI

protein sequence of TCONS_00036299-protein

>TCONS_00036299-protein ID=TCONS_00036299-protein|Name=TCONS_00036299-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MSESRSDCSILSSSQSSAISSSQASDLSSSQSSAISSSQASVLSSSQTSE
NPFEWKAGDDLTEIEKMKAVIYVKDRWMISNKAYHELSQIAFGLPRSYLV
EDMQREISKSFDVQKTPGDSAGAQMSLIDELKTDKRVRSAENNIMLKISG
DGTKLTRH
Run BLAST on NCBI

transcript from alignment at sc0001437:33157..34415+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036299 ID=TCONS_00036299|Name=TCONS_00036299|organism=Clytia hemisphaerica|type=transcript|length=1259bp|location=Sequence derived from alignment at sc0001437:33157..34415+ (Clytia hemisphaerica)
aaaaacagccatgtccatggggtgaatctgcgatgtccaggggtaaatat
ttgtgtccagggggtcaacttgatgcttgtccagggtaaaacacgtgtcc
agggggtgaaaaattgaaatgtccaggggtagatcacagaataaataata
tatcctccaccccccatgaacgaattttttctggaaaagcccaatcccTA
TTTTAATAACCAAACCCGTCGAACGGGGGATCTGACAAGGTCtgagggtt
ggaaaaaatcgaaaacttATTAAGTTATCAAGCGGGAGGCTAGTTTATCA
ACTGAGATTAATTTAGCTAAATTTGCCTGAAATTGCCAGATTTGAATCAA
CTAATCgggaattcaaaaaaatatacaagTACTTTCAAATATATAATAAC
ATTTTTCACTTAGGATCATCTTCGTGGTCGGAGAAACTTCCGGCACATCT
TTCATCACCTTCTACGGAAGAAACGGAACTTTCCATGAGTGAATCACGGT
CTGATTGTTCAATTCTTTCGTCGAGCCAATCCAGCGCTATTTCGTCAAGC
CAAGCCAGCGATCTTTCGTCAAGCCAATCCAGCGCTATTTCGTCAAGCCA
AGCCAGCGTACTTTCGTCAAGCCAAACCAGCGAAAATCCGTTCGAATGGA
AAGCAGGTAATTTTCTGACGAGTTGGCATGCGATTTAATAGCCCTGCCCA
ATAAGGAAGAAATTTATAACCATATATACTCGTTGCACGTCTTGAATCTT
AGGTCTCATATTGCGTTTCGCTCTTTAGGTGATGACTTGACTGAAATAGA
GAAAATGAAAGCTGTCATATACGTGAAGGACAGATGGATGATTTCCAACA
AAGCATATCATGAACTGTCTCAGATCGCATTTGGTTTGCCAAGATCTTAT
TTGGTGGAAGATATGCAACGcgaaatttcaaaaagctttgaCGTCCAAAA
GACACCTGGGGATAGTGCTGGAGCTCAAATGAGTTTAATTGATGAATTAA
AAACAGATAAAAGGGTCAGGTCTGCTGAAAATAATATCATGGTTAGTTTC
TTTAAAGCCTTAACTACTAACAGTTTACTAAAAATGTATGAGAGTAAATC
CAAAAATGtcagatttcaaattaaactGAAGAAAAGAAAGTCGTTTCCAT
AGATTTGCaataaatgtttttgacttaAGTGTCTTTGCTAGGTAATGATA
TCATTTGTCTTTCTCTAGTTGAAAATCAGTGGAGATGGCACCAAACTGAC
ACGGCATTC

Coding sequence (CDS) from alignment at sc0001437:33157..34415+

>TCONS_00036299 ID=TCONS_00036299|Name=TCONS_00036299|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0001437:33157..34415+ (Clytia hemisphaerica)
ATGAGTGAATCACGGTCTGATTGTTCAATTCTTTCGTCGAGCCAATCCAG
CGCTATTTCGTCAAGCCAAGCCAGCGATCTTTCGTCAAGCCAATCCAGCG
CTATTTCGTCAAGCCAAGCCAGCGTACTTTCGTCAAGCCAAACCAGCGAA
AATCCGTTCGAATGGAAAGCAGGTGATGACTTGACTGAAATAGAGAAAAT
GAAAGCTGTCATATACGTGAAGGACAGATGGATGATTTCCAACAAAGCAT
ATCATGAACTGTCTCAGATCGCATTTGGTTTGCCAAGATCTTATTTGGTG
GAAGATATGCAACGcgaaatttcaaaaagctttgaCGTCCAAAAGACACC
TGGGGATAGTGCTGGAGCTCAAATGAGTTTAATTGATGAATTAAAAACAG
ATAAAAGGGTCAGGTCTGCTGAAAATAATATCATGTTGAAAATCAGTGGA
GATGGCACCAAACTGACACGGCATATGAGTGAATCACGGTCTGATTGTTC
AATTCTTTCGTCGAGCCAATCCAGCGCTATTTCGTCAAGCCAAGCCAGCG
ATCTTTCGTCAAGCCAATCCAGCGCTATTTCGTCAAGCCAAGCCAGCGTA
CTTTCGTCAAGCCAAACCAGCGAAAATCCGTTCGAATGGAAAGCAGGTGA
TGACTTGACTGAAATAGAGAAAATGAAAGCTGTCATATACGTGAAGGACA
GATGGATGATTTCCAACAAAGCATATCATGAACTGTCTCAGATCGCATTT
GGTTTGCCAAGATCTTATTTGGTGGAAGATATGCAACGcgaaatttcaaa
aagctttgaCGTCCAAAAGACACCTGGGGATAGTGCTGGAGCTCAAATGA
GTTTAATTGATGAATTAAAAACAGATAAAAGGGTCAGGTCTGCTGAAAAT
AATATCATGTTGAAAATCAGTGGAGATGGCACCAAACTGACACGGCATAT
GAGTGAATCACGGTCTGATTGTTCAATTCTTTCGTCGAGCCAATCCAGCG
CTATTTCGTCAAGCCAAGCCAGCGATCTTTCGTCAAGCCAATCCAGCGCT
ATTTCGTCAAGCCAAGCCAGCGTACTTTCGTCAAGCCAAACCAGCGAAAA
TCCGTTCGAATGGAAAGCAGGTGATGACTTGACTGAAATAGAGAAAATGA
AAGCTGTCATATACGTGAAGGACAGATGGATGATTTCCAACAAAGCATAT
CATGAACTGTCTCAGATCGCATTTGGTTTGCCAAGATCTTATTTGGTGGA
AGATATGCAACGcgaaatttcaaaaagctttgaCGTCCAAAAGACACCTG
GGGATAGTGCTGGAGCTCAAATGAGTTTAATTGATGAATTAAAAACAGAT
AAAAGGGTCAGGTCTGCTGAAAATAATATCATGTTGAAAATCAGTGGAGA
TGGCACCAAACTGACACGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021359XLOC_021359Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036299-proteinTCONS_00036299-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036299-exon-sc0001437-1491911889:33157..33812TCONS_00036299-exon-sc0001437-1491911889:33157..33812Clytia hemisphaericaexon
TCONS_00036299-exon-sc0001437-1510915933:33157..33812TCONS_00036299-exon-sc0001437-1510915933:33157..33812Clytia hemisphaericaexon
TCONS_00036299-exon-sc0001437-1575043694:33157..33812TCONS_00036299-exon-sc0001437-1575043694:33157..33812Clytia hemisphaericaexon
TCONS_00036299-exon-sc0001437-1491911889:33935..34197TCONS_00036299-exon-sc0001437-1491911889:33935..34197Clytia hemisphaericaexon
TCONS_00036299-exon-sc0001437-1510915933:33935..34197TCONS_00036299-exon-sc0001437-1510915933:33935..34197Clytia hemisphaericaexon
TCONS_00036299-exon-sc0001437-1575043694:33935..34197TCONS_00036299-exon-sc0001437-1575043694:33935..34197Clytia hemisphaericaexon
TCONS_00036299-exon-sc0001437-1491911889:34375..34415TCONS_00036299-exon-sc0001437-1491911889:34375..34415Clytia hemisphaericaexon
TCONS_00036299-exon-sc0001437-1510915933:34375..34415TCONS_00036299-exon-sc0001437-1510915933:34375..34415Clytia hemisphaericaexon
TCONS_00036299-exon-sc0001437-1575043694:34375..34415TCONS_00036299-exon-sc0001437-1575043694:34375..34415Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001437supercontigsc0001437:33157..34415 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.350465	0.215888	0	0.0755006	0.470425	0.1983	0	0	0	0	0	0	0.223864	0	0	0	0	0.333187	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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