TCONS_00036297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036297
Unique NameTCONS_00036297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036297 ID=TCONS_00036297|Name=TCONS_00036297|organism=Clytia hemisphaerica|type=transcript|length=459bp
CAATTTCTTCCACGCGTCTGTGAGAATGATACAGACCAAGTTAAGACTAT
TCTTTTAAACGGAGAACAAATTGAGTGTATAACAAACCCTGCAAAGCATA
AGTTAATTAAAGCTTGTTTTGGAAGTGGGAAAACAGTACTTTTAATCGAA
ATGATCCGATCCCTATTGAAAGAGAAAGACCCTAAAAACTGTATTATATT
TCTCTCTTATGATCCGTTCAGTGCGCTGGACGGAAAAATAAGAGAGACCT
TCGAATTAATATCCAAGGAAGAAAAGGTTCCCGATGACCATTGCCTTAAC
TTGAAGGCGATGTCGCTTACTGATGCCCTTTCTGATGCTGAGTTTCCAGT
GTCTGACGTTTTCAACCTTTCATCGAcctcgaaaaaaaatattggagATG
TGCTGTTACATATTAAGAATAAACACCCTGAGAAAAAGGTCCATTTTTTC
GTTGACGAG
Run BLAST on NCBI

protein sequence of TCONS_00036297-protein

>TCONS_00036297-protein ID=TCONS_00036297-protein|Name=TCONS_00036297-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
QFLPRVCENDTDQVKTILLNGEQIECITNPAKHKLIKACFGSGKTVLLIE
MIRSLLKEKDPKNCIIFLSYDPFSALDGKIRETFELISKEEKVPDDHCLN
LKAMSLTDALSDAEFPVSDVFNLSSTSKKNIGDVLLHIKNKHPEKKVHFF
VDE
Run BLAST on NCBI

transcript from alignment at sc0001436:44747..45205

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036297 ID=TCONS_00036297|Name=TCONS_00036297|organism=Clytia hemisphaerica|type=transcript|length=459bp|location=Sequence derived from alignment at sc0001436:44747..45205 (Clytia hemisphaerica)
CTCGTCAACGAAAAAATGGACCTTTTTCTCAGGGTGTTTATTCTTAATAT
GTAACAGCACATctccaatattttttttcgaggTCGATGAAAGGTTGAAA
ACGTCAGACACTGGAAACTCAGCATCAGAAAGGGCATCAGTAAGCGACAT
CGCCTTCAAGTTAAGGCAATGGTCATCGGGAACCTTTTCTTCCTTGGATA
TTAATTCGAAGGTCTCTCTTATTTTTCCGTCCAGCGCACTGAACGGATCA
TAAGAGAGAAATATAATACAGTTTTTAGGGTCTTTCTCTTTCAATAGGGA
TCGGATCATTTCGATTAAAAGTACTGTTTTCCCACTTCCAAAACAAGCTT
TAATTAACTTATGCTTTGCAGGGTTTGTTATACACTCAATTTGTTCTCCG
TTTAAAAGAATAGTCTTAACTTGGTCTGTATCATTCTCACAGACGCGTGG
AAGAAATTG

Coding sequence (CDS) from alignment at sc0001436:44747..45205

>TCONS_00036297 ID=TCONS_00036297|Name=TCONS_00036297|organism=Clytia hemisphaerica|type=CDS|length=459bp|location=Sequence derived from alignment at sc0001436:44747..45205 (Clytia hemisphaerica)
CTCGTCAACGAAAAAATGGACCTTTTTCTCAGGGTGTTTATTCTTAATAT
GTAACAGCACATctccaatattttttttcgaggTCGATGAAAGGTTGAAA
ACGTCAGACACTGGAAACTCAGCATCAGAAAGGGCATCAGTAAGCGACAT
CGCCTTCAAGTTAAGGCAATGGTCATCGGGAACCTTTTCTTCCTTGGATA
TTAATTCGAAGGTCTCTCTTATTTTTCCGTCCAGCGCACTGAACGGATCA
TAAGAGAGAAATATAATACAGTTTTTAGGGTCTTTCTCTTTCAATAGGGA
TCGGATCATTTCGATTAAAAGTACTGTTTTCCCACTTCCAAAACAAGCTT
TAATTAACTTATGCTTTGCAGGGTTTGTTATACACTCAATTTGTTCTCCG
TTTAAAAGAATAGTCTTAACTTGGTCTGTATCATTCTCACAGACGCGTGG
AAGAAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021357XLOC_021357Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036297-exon-sc0001436-1491911889:44747..45205TCONS_00036297-exon-sc0001436-1491911889:44747..45205Clytia hemisphaericaexon
TCONS_00036297-exon-sc0001436-1510915933:44747..45205TCONS_00036297-exon-sc0001436-1510915933:44747..45205Clytia hemisphaericaexon
TCONS_00036297-exon-sc0001436-1575043694:44747..45205TCONS_00036297-exon-sc0001436-1575043694:44747..45205Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036297-proteinTCONS_00036297-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001436supercontigsc0001436:44747..45205 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.535001	0.178462	0	0.0321017	0.128302	0	0	0.0222703	1.40243	0.816649	0.798154	0.501595	0.47986	0.268005	2.71784	2.72629	0.217419	0	0	0.214244	0.439071	0.709346	0.867333	0.844678	0.283042	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006935Helicase/UvrB_N
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003677DNA binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0016787 hydrolase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top