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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036289 ID=TCONS_00036289|Name=TCONS_00036289|organism=Clytia hemisphaerica|type=transcript|length=1075bp
AGAAGTAAACGGAAAACGTGGTATGTTCCCTGAAAATGTGGTGACAGTAA
AAGATTCAACACACATTCAATTGATTGATGACGAACCGCAAGAACATTCA
AAAGACCTAAATCCAGTTGGTTTTGAAGAACCGAAATCGTCAACCTTAAC
CTACCCCCATGATCCAGAGAAAATCTTAAAGTCAACTGGCGATGATGGGT
CATACGAAGTAGTGAAAGCACTCAATACGTCAGTGAAATTCGTTGATGCA
GATTGTGGTCATGATTTTCCGAGTGAAATTTTACCAAGACTCTTTTACct
tgatgaaaatttcacttttaattCACTCGATGCAATTACTACGCTTTCAA
TTATCTTAAGCCAATGTTTAGAGTCACGCAACGAAGAAGGCGTTGCTTTA
ATATGCAACAACATTCAAGAGGTCAAAATGACGGAAGCTGCCTTACTGAA
AAGCAAGACCAGAAAACCAGTTGTATTCGCACCATATTTAGACGTCGACG
TTCCCNAGAAGGCGTTGCTTTAATATGCAACAACATTCAAGAGGTCAGAA
TGACTGAAGCTGCCTTACTGAAGAGCAAGACCAGAAAACCAGTTGTATTC
GCGCCATATTTAGACATCGACGTTCCtcttcaaaagttaaaaattgatCT
TGTCAAAAACTTGGAAAATACCGATAATGTTTTAATCTCAGACTATCGAA
CTCTTCGTGGTTTAGAAGTTTCGCATTCAATAATTATAGTTGATGAAGAA
GATATTATTGGGCCAAACCTTTTAGTGGAGATGATAACTCGCACCATTAC
TGACTTGGATATACTGGTACTCCCTAAAATGAACAAACAATCTCCACAAA
CAACAATACAAAAcgcatttcaaaaatttgaaaatcaaaatctaatCAAC
AAGACGATAGTAAAAGTAACAAAAGTTAACGAAGCTACGACATCTGTTGA
ACTGCAAGGAAATGGTGGTGAAATCGAGCATCTTGAAACTTTAGCACTTA
CTGATGAAGATCACAAACGGTTTgatgaaattaaaaaacttaCGCAGGAT
AATGAGCAACTACAGGAGAGCATCA Run BLAST on NCBI protein sequence of TCONS_00036289-protein >TCONS_00036289-protein ID=TCONS_00036289-protein|Name=TCONS_00036289-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
MFRVTQRRRRCFNMQQHSRGQNDGSCLTEKQDQKTSCIRTIFRRRRSXEG
VALICNNIQEVRMTEAALLKSKTRKPVVFAPYLDIDVPLQKLKIDLVKNL
ENTDNVLISDYRTLRGLEVSHSIIIVDEEDIIGPNLLVEMITRTITDLDI
LVLPKMNKQSPQTTIQNAFQKFENQNLINKTIVKVTKVNEATTSVELQGN
GGEIEHLETLALTDEDHKRFDEIKKLTQDNEQLQESI Run BLAST on NCBI transcript from alignment at sc0001436:34176..35723- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036289 ID=TCONS_00036289|Name=TCONS_00036289|organism=Clytia hemisphaerica|type=transcript|length=1548bp|location=Sequence derived from alignment at sc0001436:34176..35723- (Clytia hemisphaerica)
AGAAGTAAACGGAAAACGTGGTATGTTCCCTGAAAATGTGGTGACAGTAA
AAGATTCAACACACATTCAATTGATTGATGACGAACCGCAAGAACATTCA
AAAGACCTAAATCCAGGTTCCAAATTAATTTCTTTTAAAAATGGAGATTA
ATGGAGGTTATTAGACCCTCCCAACCTCTCCTCCATAAAATTTCCGATAA
AGTTAGGGGTCAACAATCTCGAGATATCGGATTTTGTTTTGTTTTAATGG
CGGTTCGCAGTGTTTTGTTGCTTTGAAAATGGTCCGATCCTTGTTTTTAG
ATTTTTTTACCTAAGAATTTATTTTTAACAACATGTATTTAACAAAGATA
GGCTACACATGCAGGTCTATTTTCTAAAAAGGGATTCAAACAAACATTAA
ATGAAGTCCGCTTCAAAGAGGTTTTCAATGGGGACCTACCACTAAAGTTC
AATTTACCTTAATATCAATGTACCTTAATATCAAGCCTATGTCCCTCGCA
ACACAAGAATTTTTGATTAATGACGGTGTCAAGGAAAAAGCTATGGTTTT
CTGGTACAGGCAACTTAATATCTCACCTTTTCATTTTAGTTGGTTTTGAA
GAACCGAAATCGTCAACCTTAACCTACCCCCATGATCCAGAGAAAATCTT
AAAGTCAACTGGCGATGATGGGTCATACGAAGTAGTGAAAGCACTCAATA
CGTCAGTGAAATTCGTTGATGCAGATTGTGGTCATGATTTTCCGAGTGAA
ATTTTACCAAGACTCTTTTACCTTGATGAAAATTTCACTTTTAATTCACT
CGATGCAATTACTACGCTTTCAATTATCTTAAGCCAATGTTTAGAGTCAC
GCAACGAAGAAGGCGTTGCTTTAATATGCAACAACATTCAAGAGGTCAAA
ATGACGGAAGCTGCCTTACTGAAAAGCAAGACCAGAAAACCAGTTGTATT
CGCACCATATTTAGACGTCGACGTTCCCNAGAAGGCGTTGCTTTAATATG
CAACAACATTCAAGAGGTCAGAATGACTGAAGCTGCCTTACTGAAGAGCA
AGACCAGAAAACCAGTTGTATTCGCGCCATATTTAGACATCGACGTTCCT
CTTCAAAAGTTAAAAATTGATCTTGTCAAAAACTTGGAAAATACCGATAA
TGTTTTAATCTCAGACTATCGAACTCTTCGTGGTTTAGAAGTTTCGCATT
CAATAATTATAGTTGATGAAGAAGATATTATTGGGCCAAACCTTTTAGTG
GAGATGATAACTCGCACCATTACTGACTTGGATATACTGGTACTCCCTAA
AATGAACAAACAATCTCCACAAACAACAATACAAAACGCATTTCAAAAAT
TTGAAAATCAAAATCTAATCAACAAGACGATAGTAAAAGTAACAAAAGTT
AACGAAGCTACGACATCTGTTGAACTGCAAGGAAATGGTGGTGAAATCGA
GCATCTTGAAACTTTAGCACTTACTGATGAAGATCACAAACGGTTTGATG
AAATTAAAAAACTTACGCAGGATAATGAGCAACTACAGGAGAGCATCA Coding sequence (CDS) from alignment at sc0001436:34176..35723- >TCONS_00036289 ID=TCONS_00036289|Name=TCONS_00036289|organism=Clytia hemisphaerica|type=CDS|length=711bp|location=Sequence derived from alignment at sc0001436:34176..35723- (Clytia hemisphaerica)
ATGTTTAGAGTCACGCAACGAAGAAGGCGTTGCTTTAATATGCAACAACA
TTCAAGAGGTCAAAATGACGGAAGCTGCCTTACTGAAAAGCAAGACCAGA
AAACCAGTTGTATTCGCACCATATTTAGACGTCGACGTTCCCNAGAAGGC
GTTGCTTTAATATGCAACAACATTCAAGAGGTCAGAATGACTGAAGCTGC
CTTACTGAAGAGCAAGACCAGAAAACCAGTTGTATTCGCGCCATATTTAG
ACATCGACGTTCCTCTTCAAAAGTTAAAAATTGATCTTGTCAAAAACTTG
GAAAATACCGATAATGTTTTAATCTCAGACTATCGAACTCTTCGTGGTTT
AGAAGTTTCGCATTCAATAATTATAGTTGATGAAGAAGATATTATTGGGC
CAAACCTTTTAGTGGAGATGATAACTCGCACCATTACTGACTTGGATATA
CTGGTACTCCCTAAAATGAACAAACAATCTCCACAAACAACAATACAAAA
CGCATTTCAAAAATTTGAAAATCAAAATCTAATCAACAAGACGATAGTAA
AAGTAACAAAAGTTAACGAAGCTACGACATCTGTTGAACTGCAAGGAAAT
GGTGGTGAAATCGAGCATCTTGAAACTTTAGCACTTACTGATGAAGATCA
CAAACGGTTTGATGAAATTAAAAAACTTACGCAGGATAATGAGCAACTAC
AGGAGAGCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036289-exon-sc0001436-1575043694:35608..35723 | TCONS_00036289-exon-sc0001436-1575043694:35608..35723 | Clytia hemisphaerica | exon |
| TCONS_00036289-exon-sc0001436-1575043694:34176..35134 | TCONS_00036289-exon-sc0001436-1575043694:34176..35134 | Clytia hemisphaerica | exon |
| TCONS_00036289-exon-sc0001436-1510915933:35608..35723 | TCONS_00036289-exon-sc0001436-1510915933:35608..35723 | Clytia hemisphaerica | exon |
| TCONS_00036289-exon-sc0001436-1510915933:34176..35134 | TCONS_00036289-exon-sc0001436-1510915933:34176..35134 | Clytia hemisphaerica | exon |
| TCONS_00036289-exon-sc0001436-1491911889:35608..35723 | TCONS_00036289-exon-sc0001436-1491911889:35608..35723 | Clytia hemisphaerica | exon |
| TCONS_00036289-exon-sc0001436-1491911889:34176..35134 | TCONS_00036289-exon-sc0001436-1491911889:34176..35134 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001436 | supercontig | sc0001436:34176..35723 - |
Blast
The following BLAST results are available for this feature:
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