|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036288 ID=TCONS_00036288|Name=TCONS_00036288|organism=Clytia hemisphaerica|type=transcript|length=664bp
gggaagtagatttttttttcaaattttcgaaattttttttttaaatctta
aaaacaatttgctggttgcaatagaaatttgattttctaaaatgttgttt
tttcctattgaaagctatagaaaattgaatcatttttaagatattaaatt
ttatttgatttgattttattgaatttatgaaggtcaaaagcctttttcaa
ggctaaATTCACTTAGTACTAACTGTACTAAGTGTAACAAGGTGGTGGTG
TTACTAACTTCTTCCGAGAAAGCAgttagtaggcatgatgtcttgtacta
actgcttcaccTCCCCCTGGCCCGTGCAAGGGTTACAAAGTTTCTAATGA
AACGACCttcatctttttctttatttttcagatgGAAGCACGTATTGTTG
CACTTCTTTTTTCGCTCTGATTTTCTCCGTCGCCATCCCGACATCCATGA
TCATCGTCGGGTCATACCACATCGATGACTGTCCAATGGAACCAATGATT
CCTATCTTCATGGTGGTGTCTGGCGTGGCTTGGATCTTTCACACTATTTT
CACATTCTGCTTCAATATCTGGGGACGCTGGGAAAGACAGAAGTTGACAA
AATGCTCAATGGCGCTCGCAATCCTTCTTTATGTTTTCTTATTCGCTTGG
AATCTCGCAGGTAT Run BLAST on NCBI transcript from alignment at sc0001436:179..1609- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036288 ID=TCONS_00036288|Name=TCONS_00036288|organism=Clytia hemisphaerica|type=transcript|length=1431bp|location=Sequence derived from alignment at sc0001436:179..1609- (Clytia hemisphaerica)
GGGAAGTAGATTTTTTTTTCAAATTTTCGAAATTTTTTTTTTAAATCTTA
AAAACAATTTGCTGGTTGCAATAGAAATTTGATTTTCTAAAATGTTGTTT
TTTCCTATTGAAAGCTATAGAAAATTGAATCATTTTTAAGATATTAAATT
TTATTTGATTTGATTTTATTGAATTTATGAAGGTCAAAAGCCTTTTTCAA
GGCTAAATTCACTTAGTACTAACTGTACTAAGTGTAACAAGGTGGTGGTG
TTACTAACTTCTTCCGAGAAAGCAGTTAGTAGGCATGATGTCTTGTACTA
ACTGCTTCACCTCCCCCTGGCCCGTGCAAGGGTTACAAAGTTTCTAATGA
AACGACCTTCATCTTTTTCTTTATTTTTCAGATGGAAGCACGTATTGTTG
CACTTCTTTTTTCGCTCTGATTTTCTCCGTCGCCATCCCGACATCCATGA
TCATCGTCGGTAAGTGTTTTTTCATCGCCGGTGAGGATCAGCTAACCTCG
TTCCCTGCGTATTATCGGCTTACTGATAATGACAGATAATACCCTAGATT
ATATTATAGTCTAATACAAATCACTATCTAAGAAATAAGCCCAAATCTGA
AGAAAATTCGCAAACGGGCTTTTTGCTGAAAGAGTTACCAGTCGTTAGAG
TTTGCCAGTCTTCGAAACTCTCCTGCCGATTTTTTCCGTATGCCACCATA
ACACCATACCGACATATTTTCCCGCCTTTACTATCACTGTAACAAACGAT
AACATCGTCAAATAATACCCTGACATTGTCTGCTTTTTGAATGAGAAAGG
TCACGTAATTCAAAAATAAAACGTCAGATTTCATTTGTTCCTGGATCTGC
ACTACCGTTCGCTTATGTAACGATACATTTTTTTATTGTGTATTGTTTTC
CATCTGAGGGAGAAAACTCGCATTAGCCTACACCAGGGTATTCTATCAGT
GACGTAAATAAAGCCTAGGATACACGGGGATGAGGTTGAGGATCGTCGGA
AGCAAGTAACTCAGTATGCACCTTAAGTGTTCCATCTCGTTACCCAGAAC
TAAGCAATCTTAAGTTTATCCAACCCTGCGTATTAAATTAGAATTTCAAA
CCTCTACAAAACCACCAGTGTGTATCCAAAAAAACTTCCCGTAATCATGA
CATATGCATATATATGAAGAGATTTATGATAAAATGATATAAAATAATAA
CCGAGGACTCTTATCTTCCCGTTTAGGGTCATACCACATCGATGACTGTC
CAATGGAACCAATGATTCCTATCTTCATGGTGGTGTCTGGCGTGGCTTGG
ATCTTTCACACTATTTTCACATTCTGCTTCAATATCTGGGGACGCTGGGA
AAGACAGAAGTTGACAAAATGCTCAATGGCGCTCGCAATCCTTCTTTATG
TTTTCTTATTCGCTTGGAATCTCGCAGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036288-exon-sc0001436-1575043694:1151..1609 | TCONS_00036288-exon-sc0001436-1575043694:1151..1609 | Clytia hemisphaerica | exon |
| TCONS_00036288-exon-sc0001436-1575043694:179..383 | TCONS_00036288-exon-sc0001436-1575043694:179..383 | Clytia hemisphaerica | exon |
| TCONS_00036288-exon-sc0001436-1510915933:1151..1609 | TCONS_00036288-exon-sc0001436-1510915933:1151..1609 | Clytia hemisphaerica | exon |
| TCONS_00036288-exon-sc0001436-1510915933:179..383 | TCONS_00036288-exon-sc0001436-1510915933:179..383 | Clytia hemisphaerica | exon |
| TCONS_00036288-exon-sc0001436-1491911889:1151..1609 | TCONS_00036288-exon-sc0001436-1491911889:1151..1609 | Clytia hemisphaerica | exon |
| TCONS_00036288-exon-sc0001436-1491911889:179..383 | TCONS_00036288-exon-sc0001436-1491911889:179..383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001436 | supercontig | sc0001436:179..1609 - |
Blast
The following BLAST results are available for this feature:
|
