TCONS_00036287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036287
Unique NameTCONS_00036287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036287 ID=TCONS_00036287|Name=TCONS_00036287|organism=Clytia hemisphaerica|type=transcript|length=346bp
TTTTTCTTAGAAACGTCAAATTAATTTGAAGCATATTGAGTCACGACCAT
CAAAGTCTAACAAGAAGGATTATGAATTTTATGTGGATATCGACGCAGAG
ACTGCCAATTCCGAAAGTGTTAAACTTGTCGTAGAAGATTTGAAGTCGAA
AGCCAAAAGTGTTGTTCTGCATAATGAAGAATCGGTCCCATGGTTTCCAA
GAAAAATTGCTGACCTCGACAAGTTCGCTGACAGAGTTTTGAGTTATGGA
TCAGAGCTTGATTCAGACCATCCTGTAAGTGACGTTTAGAAAAtttgttt
caacttgacgaaTAATGATCTGTATTTGATATTGAGACATCCCCTT
Run BLAST on NCBI

transcript from alignment at sc0001436:1937..2895+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036287 ID=TCONS_00036287|Name=TCONS_00036287|organism=Clytia hemisphaerica|type=transcript|length=959bp|location=Sequence derived from alignment at sc0001436:1937..2895+ (Clytia hemisphaerica)
TTTTTCTTAGAAACGTCAAATTAATTTGAAGCATATTGAGTCACGACCAT
CAAAGTCTAACAAGAAGGATTATGAATTTTATGTGGATATCGACGCAGAG
ACTGCCAATTCCGAAAGTGTTAAACTTGTCGTAGAAGATTTGAAGTCGAA
AGCCAAAAGTGTTGTTCTGCATAATGAAGAATCGGGTATGTCGAaaataa
gttttcaaaattatcatCTTAAAAGTTTGATAAGGAATTAAAGCCAAAAT
CATACtactaaaaacatatttttcactCCTTCTAAGTTTAATAGAAACAG
TATTATTTCAATAAAGCAACATGAGTATTCTAATGTTGTAAATCAGATAC
GACGTATTGCGCATGGCAGATACGTCGGGGCCGTATTAGACAGGCTTCCG
TCGCTCCTGTTTAAATACTACACTaatttattgtgtgctttgatcTATTA
CCTATTCAAGTCCATGGGATTTGCTTTACACACACTTACTATATATCGTT
TGATATTGATTTAATACTACGCTCGACATATTGTTTCTTTTAGTTTTAGA
AAGTTATACTAAGTCGGATTTTTGTGTAATGTTTTTATGTACTTATATAC
GATATGACGTAAATAGCGGAAGCTTTTAAGCCTATTAATTCGGCCTCGAA
ACTTGTTTTTCTGAAAACATACTTTCATGCGCATCCAAGTAACATTTATA
TAACCGTGAAGCCCTTCCTATCTTGTAATTTTTCAATGCCAGTTGAATCA
TTAACCAAAAAACAACTAACTTTGAAACTTCTTATTGATTTCGTTTAGTC
CCATGGTTTCCAAGAAAAATTGCTGACCTCGACAAGTTCGCTGACAGAGT
TTTGAGTTATGGATCAGAGCTTGATTCAGACCATCCTGTAAGTGACGTTT
AGAAAAtttgtttcaacttgacgaaTAATGATCTGTATTTGATATTGAGA
CATCCCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021347XLOC_021347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036287-exon-sc0001436-1491911889:1937..2121TCONS_00036287-exon-sc0001436-1491911889:1937..2121Clytia hemisphaericaexon
TCONS_00036287-exon-sc0001436-1510915933:1937..2121TCONS_00036287-exon-sc0001436-1510915933:1937..2121Clytia hemisphaericaexon
TCONS_00036287-exon-sc0001436-1575043694:1937..2121TCONS_00036287-exon-sc0001436-1575043694:1937..2121Clytia hemisphaericaexon
TCONS_00036287-exon-sc0001436-1491911889:2735..2895TCONS_00036287-exon-sc0001436-1491911889:2735..2895Clytia hemisphaericaexon
TCONS_00036287-exon-sc0001436-1510915933:2735..2895TCONS_00036287-exon-sc0001436-1510915933:2735..2895Clytia hemisphaericaexon
TCONS_00036287-exon-sc0001436-1575043694:2735..2895TCONS_00036287-exon-sc0001436-1575043694:2735..2895Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001436supercontigsc0001436:1937..2895 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.6613	6.2835	7.9004	8.60793	15.4847	13.2461	111.533	101.511	172.777	224.083	145.556	167.708	54.2542	69.3532	85.2866	41.3787	114.743	133.626	105.939	110.937	129.463	141.599	62.0843	79.0897	27.5255	21.1265	426.509	472.435	22.4324	37.4431
Blast
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BLAST of TCONS_00036287 vs. Swiss-Prot (Human)
Match: PH4H (Phenylalanine-4-hydroxylase OS=Homo sapiens GN=PAH PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.672e-19
Identity = 38/88 (43.18%), Postives = 61/88 (69.32%), Query Frame = 2 
Query:   20 INLKHIESRPSKSNKKDYEFYVDIDAET--ANSESVKLVVEDLKSKAKSVVL-HNEESVPWFPRKIADLDKFADRVLSYGSELDSDHP 274
            +NL HIESRPS+  K +YEF+  +D  +  A +  +K++  D+ +    +     +++VPWFPR I +LD+FA+++LSYG+ELD+DHP
Sbjct:   60 VNLTHIESRPSRLKKDEYEFFTHLDKRSLPALTNIIKILRHDIGATVHELSRDKKKDTVPWFPRTIQELDRFANQILSYGAELDADHP 147
The following BLAST results are available for this feature:
BLAST of TCONS_00036287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PH4H1.672e-1943.18Phenylalanine-4-hydroxylase OS=Homo sapiens GN=PAH... [more]
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