TCONS_00036281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036281
Unique NameTCONS_00036281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036281 ID=TCONS_00036281|Name=TCONS_00036281|organism=Clytia hemisphaerica|type=transcript|length=562bp
AATTGCTGAGAGAATTGGTAAATCTCAACAGTCAAATATGTGTAACAATC
ACAGAGGTTAGAGACCTCCTacaaaatcaacaacaaaacCAACAACAAAA
CTAACAACAAGACTAACCACCATTGCCTCCACCACCTCAACCAGAACCTC
AAGTAAACGAGGCTGATTATTCGTATTGGGACAGAAATTTCTTGGACATT
GAAAAGGGAAGGAAACCAACTAAATATGCTTTGCCAAGAAACTGTGGGGG
ATGAGTCGAAAAATGGCATCATAGAACCTGGACGGACAGTTGGTGCAAAT
ATCACAGAACTTACAGTAGAAAGACTTGCCTTGTTGAAACgtctTCTGAA
GTATCATTACCGAGAAAGATTTACGAATGCTATGTGGAGAACGTGTCGGG
AATCCATCAATCAAGCGGCCAGAGATTTGAGAAGAGCTGAACGTGAAGCT
GATGCCGAAGTTTAAAAGTAGATTTATTGACGACCCTTGTTTTAACCTTG
TTTATAAACCGTGTGTGTAAATATAACATAACTAATTATCATCTAAATAT
ATAACCAAGAAC
Run BLAST on NCBI

transcript from alignment at sc0001435:50085..51025-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036281 ID=TCONS_00036281|Name=TCONS_00036281|organism=Clytia hemisphaerica|type=transcript|length=941bp|location=Sequence derived from alignment at sc0001435:50085..51025- (Clytia hemisphaerica)
AATTGCTGAGAGAATTGGTAAATCTCAACAGTCAAATATGTGTAACAATC
ACAGAGGTTAGAGACCTCCTACAAAATCAACAACAAAACCAACAACAAAA
CTAACAACAAGACTAACCACCATTGCCTCCACCACCTCAACCAGAACCTC
AAGTAAACGAGGCTGATTATGTAAGTACTACAACTAGTATTTAAATCGAT
CATGATAGTCTAGAAATGTTTCTAGTTAACAAGTCAAGAAGTCGATTGAT
GTCATTCATAAGCCATTCATCCCTGCATTCATAATTCCATGTATATTTTT
TATATTAAATACATTGTTTTACTTTTTAGTCGTATTGGGACAGAAATTTC
TTGGACATTGAAAAGGGAAGGAAACCAACTAAATATGCTTTGCCAAGAAA
CTGTGGGGGATGAGTCGAAAAATGGCATCATAGAACCTGGACGGACAGTT
GGTGCAAATATCACAGAACTTACAGTAGAAAGACTTGCCTTGTTGAAACG
TATGTATATATTGAATTAATAAATAAACTATTAACCCTTACTACAACTAA
CTTATTGTTTGTTGTCTTTCCTTGGTTTTCATGGTTGTATTAGTATTTTA
AGGTTCGTATGCCCTCTCTTTGGGATCTAAAAAATCTGAAAATGATGAGG
TGAGCACAACCGAATATTGCTTTTCTCTGAAGTAATTAAGTCTGAGTTGT
TTTACCTTTCATTTTCAAGGTCTTCTGAAGTATCATTACCGAGAAAGATT
TACGAATGCTATGTGGAGAACGTGTCGGGAATCCATCAATCAAGCGGCCA
GAGATTTGAGAAGAGCTGAACGTGAAGCTGATGCCGAAGTTTAAAAGTAG
ATTTATTGACGACCCTTGTTTTAACCTTGTTTATAAACCGTGTGTGTAAA
TATAACATAACTAATTATCATCTAAATATATAACCAAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021341XLOC_021341Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036281-exon-sc0001435-1575043694:50856..51025TCONS_00036281-exon-sc0001435-1575043694:50856..51025Clytia hemisphaericaexon
TCONS_00036281-exon-sc0001435-1575043694:50527..50696TCONS_00036281-exon-sc0001435-1575043694:50527..50696Clytia hemisphaericaexon
TCONS_00036281-exon-sc0001435-1575043694:50085..50306TCONS_00036281-exon-sc0001435-1575043694:50085..50306Clytia hemisphaericaexon
TCONS_00036281-exon-sc0001435-1510915933:50856..51025TCONS_00036281-exon-sc0001435-1510915933:50856..51025Clytia hemisphaericaexon
TCONS_00036281-exon-sc0001435-1510915933:50527..50696TCONS_00036281-exon-sc0001435-1510915933:50527..50696Clytia hemisphaericaexon
TCONS_00036281-exon-sc0001435-1510915933:50085..50306TCONS_00036281-exon-sc0001435-1510915933:50085..50306Clytia hemisphaericaexon
TCONS_00036281-exon-sc0001435-1491911889:50856..51025TCONS_00036281-exon-sc0001435-1491911889:50856..51025Clytia hemisphaericaexon
TCONS_00036281-exon-sc0001435-1491911889:50527..50696TCONS_00036281-exon-sc0001435-1491911889:50527..50696Clytia hemisphaericaexon
TCONS_00036281-exon-sc0001435-1491911889:50085..50306TCONS_00036281-exon-sc0001435-1491911889:50085..50306Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001435supercontigsc0001435:50085..51025 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.301511	0.392027	0.455181	0.111331	18.5682	11.3527	4.78089	4.95968	2.96423	1.88829	2.74924	2.27578	0.200525	0.485911	0.7419	0.734928	0.528133	1.08264	0.320512	0.558989	0.583035	0.568768	0.345706	0.73336	0	0.0963037	0.275621	0.147075	0.892409	0.340959
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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