TCONS_00036279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036279
Unique NameTCONS_00036279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036279 ID=TCONS_00036279|Name=TCONS_00036279|organism=Clytia hemisphaerica|type=transcript|length=1555bp
CTNATGTCGATGGTGCTGCTGGAGATGATGAAAGTGCTGGTGAAAATGAA
GaagctccaaccaaaaagaaatcaagaaagaaaTCAACTTCAAAGAAAAC
GCCAAAAGTGCCAAAGAGCCCTAAAAAGTCAGCCTCTCCAAAGAAAAAGG
CTGCACCGAAAACGCCAAAGCGGGGTAACAAACTTATTCCAAATCCTGAC
ATCAATTTATTGGATGAAGACCCAACATACTCCAAGGACAGCACGGTTCC
TCTGTCCATAGAGCGACAGGCCTTTAAAGCTGTCATTACCAACGATGGCA
CTTTATTGGAAGCTTTGCATAAGGATGGAAAGAATTGCTATACTTTATTT
CAACAACGTAGCCCTCAAATATCACGTTCAGCTTACAAGTACGCTTTGCT
TCAAGAGAACTTGGACTATTGCAAACTGATGTTAAAAGATAGAGATGAAG
TTACTGCAAAACCAAAAACTGTCGATTTGAGCAGAAAAGATACCGGAAAG
AACTTAGCTCATTGATTGACCATTTTTACGAAGCCGTTCAAACTGGTAAT
CGAGAGATGGCTGGTGAAATTGCAAAACTCGCAATCAAGAAGGATGGATA
CGGTTTCAATTTCCTCCATGATAATTTGTTGAATTTCACAAAAGAGAAAC
TGCCATCTTTCAAGGCTGCGTCGGTTACCAAGAAAACCCATGTCTCTAGA
TCTATTGCACCGATGTTTTGCGCTTGTATCAATCCTAACGCCAAATACCT
TCAAGAAGTGTTGAATGTTCATGATGACATCAATATTTCGGACTACGCGC
AGAACAGGCCTATTCATTATGCTGCTGCTTGTTCTGGCCCTGGACCATTG
AAACTACTCATTTCAAGAGGAGCTGACGTCACCATCCCGAACGGGCAAAA
ATTGACACCACTCATAATTGCTGTCAAATGCAACCGTGTAGAAAACAGCT
CAGTTCTGATGAGTTGCAAAGTGGCTCAGAATGAGGATAGTGATGATGGT
GACGATGATGAAGGTGAAATTGGTGAAAAAGATAAAGCTGACGAAGCAAA
CGCACCAATGAAACCGAAGATCAACATCAACGCTAAAGATAAGAAATCAT
TCACTGCTCTTCATCATGCAGCTAAACGTGGATTTAACGACTGCATTAAG
GTATTGCTGGAACACAATGCTAATGTCAATATCAAATCAAGTGCTGGTCA
AGAGAATATGACACCACTTGGTTTGGCTGCAGCAAAAGGACATTACGAAA
CAGTCAAATTCCTCCATGAAAATGGTGCTTCACCTGACCTGAAAAGtata
ggaatttttttttctgaaaatagaTTTTTTCTAAATCAAAGCTACATGTT
CTTTATAACTTGAAATGCAAGAAAGTTGTGTCGAAAACCTTTTTAACAAT
ATACTGGTTTAccaaatttaaaagaatttacAGCTCGTTTTGTGCTAGca
aactttgatttttcaaagccTATAAATATTCTTGTTAGCTAAACTGACTC
AGACGATTATTTTAATATTatcgtcaacatgaaaaatatgagcaatctga
ttggc
Run BLAST on NCBI

transcript from alignment at sc0001435:6530..17089+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036279 ID=TCONS_00036279|Name=TCONS_00036279|organism=Clytia hemisphaerica|type=transcript|length=10560bp|location=Sequence derived from alignment at sc0001435:6530..17089+ (Clytia hemisphaerica)
CTNATGTCGATGGTGCTGCTGGAGATGATGAAAGTGCTGGTGAAAATGAA
GGTATTTTTTCTGAGAATTTCAACTGATCTTTTCTTAAAAAGCAACCTAT
GAGATCTGCATCTTGTTCTATTGGGTTGGCATAAGACTATCCTGTATGAA
TCATGAATCAATAAGCACTCTTGAGGTAATTATAATTTTTACTTGGTTTT
TCTTCATGAAACTCTCTGAGGAGGTCTCCATTTTGTTAGGTTAGGTTTAG
TTTTAAGTTTAAAATACAGTGGGACGCACTATAATTGTTAAGCTGTTTTA
AGAATACAGAGTTCATGATATgcgccattgcaatgtcttctacattaccc
aacagctgattggttgaaagttacgtattgactgattttacgtcacttat
acaaccaatcagctattgggtccgtgatgtaatggcaatggtgcatatca
tgaatagagggAGTAATGATTAAAAGGCTCTCTCAgtattttaagccatt
ttactTAGAGTATTGTATTGTCCGGTATAAAAAAGGAACCCCTTTTCTGG
TCATGACATAGAATCACCTCTAATTTGCAAAATGAGTTTTCGTGCTTTCG
TCATTTGTatattttactttaaattttcagaagctccaaccaaaaagaaa
tcaagaaagaaaTCAACTTCAAAGAAAACGCCAAAAGTGCCAAAGAGCCC
TAAAAAGTCAGCCTCTCCAAAGAAAAAGGCTGCACCGAAAACGCCAAAGC
GGGGTAACAAACTTATTCCAAATCCTGACATCAATTTATTGGATGAAGAC
CCAACATACTCCAAGGACAGCACGGTTCCTCTGTCCATAGAGCGACAGGC
CTTTAAAGCTGTCATTACCAACGATGGCACTTTATTGGAAGCTTTGCATA
AGGATGGAAAGAATTGCTATACTTTATTTCAACAACGTAGCCCTCAAATA
TCACGTTCAGCTTACAAGTACGCTTTGCTTCAAGAGAACTTGGACTATTG
CAAACTGATGTTAAAAGATAGAGATGAAGTTACTGCAAAACCAAAAACTG
TCGATTTGAGCAGAAAAGATACCGGAAAGTAAGGATTTTGAAATATTGGG
AATAATGCATATTTTTCGACATTCAGAAATAACACTTCACCATGAGggtt
tattggacctaccccggtggggtggaggtcctataaattaacctttgtcc
gttcgttcgttcgtctgttcgttcgttcgttcgttattagctttcctcgt
gattggctcattagttttttctgattttttgcacaaagatgtataactat
aaaccctcaaatgtgacggagcccgattttcgaaaaaaaaaatttttggg
ccaatcagattttttcaaaaaattttagttGGCTCCAAataacgcatgtt
tatctataagaatcactattaataagcatacatcaatgttcttagccaaa
ttactcaatttttgatgagatagatgttttttttgctcacgaNNNNNNNN
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NNNNNNNNNNNNNNttttagcgaatcacgatttcaaaaaatttcgcgtgg
ataaattttagcgaatactcatattacattattgactgaattcgttttct
agcatttctttgcactgtaACCCttcttattgataaaaatgtatcaaggc
aatataaccagaaatttcgcgcggataaattttagcgatctgtcgattcg
ccgtgttttagcgagatttattttagcgaaagtagggaaaactcgctaaa
acgctaaaattagtctcgctaaaatttctacgattaaagtaatgtTTTTT
CATAGAATATCATGCCTAGCTTTAAGTTGTCTCGCTAATACAGGGTGATT
AAAAAGAAACCGCACCCTTAGATTTTTTGGCGTAACTTGTTTTCTACTCA
TCCCTACTCATCGTATCACCATGAAAATTTAAAGCCTTTTTTCTTAGTAA
ATTCAAAGCCTATGTGTGAAATTTGAAAGTTATACCGTAAATATTTTATC
AAGAAtcagaagtttgaaaaaagtaaacagaaaaaaagaaacgtcaaaaa
ttttagGGGTGTGGTTCTTTCTGAATCACCCTGTGTAATTGATTATACCA
TCATGTTTCTGTTTCAGGAACTTAGCTCATTGATTGACCATTTTTACGAA
GCCGTTCAAACTGGTAATCGAGAGATGGCTGGTGAAATTGCAAAACTCGC
AATCAAGAAGGATGGATACGGTTTCAATTTCCTCCATGATAATTTGTTGA
ATTTCACAAAAGAGAAACTGCCATCTTTCAAGGCTGCGTCGGTTACCAAG
AAAACCCATGTCTCTAGATCTGTAAGTGCTTTTTCTATGATTTACCAACC
ATTTCATATTTTGTTGGGTTTTTTCTCATTGACTTTTataaaccctggac
caagctatatccgccatatttttgatcggagtttttttgaaagtgtttcC
CGCAAAGAAGCAATTGTGCAGCGTTGAGCTTTAAACATTCTAACGAGCTT
CATCATCATAAGTtttcgaggaaaagtagatctagcgttTTCGATGAATT
TAAACCGCTAATGAGTAGTgctgccattagggtaccacttttcaaaaaac
tccgatcaaagattttgcttggccgggattgaatAACTTGGTctagggta
tataaaggtcagtggtttttcccggaaaagaTAATCAGTTGCTGGGGATG
TTTTCTAAAAAACATTAACTTTGTTTGATCAGCAGGATGTCGTTCAAAAT
ACAAGGGTAATTcgaagattcgaatgttttgatgttgatttcaccaaaat
acaggtagtgaaaaatcaaaacaaggaAGAGAGAGAACGCTAATTTGTTG
acatttttcaagttgacgataaaccaggttatcacacttttactcgtaca
atattggatatattttctcgttcagagttttctatattataatatgacaa
aaaatctgaactcgaaaaatatatcccatattgtactctgtACCGTGTGC
GTATACGTATTGTTCACTTGGTTCATGACTTTTGCTTTACAGATTCTTTT
AAAGTAAATATTacattaaaaatttaaaactttgaaattattcATATTTT
CGTGTTTAACTACGAGCAGATTGCACCGATGTTTTGCGCTTGTATCAATC
CTAACGCCAAATACCTTCAAGAAGTGTTGAATGTTCATGATGACATCAAT
ATTTCGGACTACGCGCAGAACAGGCCTATTCATTATGCTGCTGCTTGTTC
TGGCCCTGGACCATTGAAACTACTCATTTCAAGGTTTGCTATGGATTATG
TTTTTACCGTGTtaataaaaatcagaaagttttaatatttcaaatgtttt
aaaatgaaactTGACGTTTTTAAGTCTTTTTAACATCATTAGTAGTTCTC
GTCAAAAAATcaattcctttaaggtagtctaGGTTTTGATAGCTTCTGCT
TTTTTTAACGGTAGCAGGTCGTGTAATATATAATTCATAGTTCTCTAGTG
GCTTTGACATTCCCCATAACAATCTAAACGTGCGATTGTCTTGCTTTTAA
ATTTGTGCCTGGAAATCTCTAAAATTTATCTTATAATATTTTCTTCTGTT
CTTCCCTTTACGTTCATCAGAGGAGCTGACGTCACCATCCCGAACGGGCA
AAAATTGACACCACTCATAATTGCTGTCAAATGCAACCGTGTAGAAAACA
GCTCAGTTCTGATGAGTTGCAAAGTGGCTCAGAATGAGGATAGTGATGAT
GGTGACGATGATGAAGGTGAAATTGGTGAAAAAGGTACATACAGACCAta
ttcagacgttacggtttcgtataGCTTCGGTATGATTTTtgttacggatc
gagagtgttcatacTAATTTCCGAACGTTCTGGAGCAAGAAAATGGAGCA
GTTCCGATGAAAATAAAGGAGCGAAACTGTTTCGAGCTGTTTTGCTTCTG
CAACGTCTTCTTTATTGACGGTTTCAAATTTTCACGTTCACACATTGTTT
TGGAACCGCTTCGTTTTAGAGCGGTACAAAACCGTCTGAACATGGTTTCA
GTTGAGTCTAATTCGAACCTTTTCTTctcgaatatctccttaactcTTGC
AAGTTTTCAAATCCCTTCAGCTAACAATACCTCATTAAAGCAAACTCAAT
ATTTCAAAGTTTCCTTAGCTCGTCGAGaaaattgttcgagttatggaaac
tccACTATACTACAAGAGTAGTATGTAGTCGTTGCGCAACACATACTATA
TTAGCAATTTGAAAAGACAATGGATTTCTCATACAGCTCCAGGGTCCGGG
ATCAATTGGTAGTCCCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNGATCTTAGCGACCTGGGCACTGCTATGCGCAA
CCGCGACTCCTGGCGCCAGCGAGTGGAATCCAttgtctcgactgcggtcg
agcaatgatgatgatgatgatactACAAGATTATTTTTAACAAACTGTTA
ATTTTGGTTGAGGCTTAGatgttcttcttttttagaGATCTGTAGAATTA
TGTTCTCTTAATGCTACTTTCTTTTTCTCGGACGGGGGCTTTGTTCTCGG
ACGGGGGAATTTGATATAAAAATGACTGTATGTATAGACAAAGGGCCTTA
AAAATTGATCCAtgtgtttttttcaaatcaatacAAATAGAAAATGTCAA
TAACGTTTGTAAGTTTCATTTAATTGTAATCAATTTGAACTTTCTATTTT
GAGAAATTATGATAATTTCGGGTTTTTGAGGCAAACTTTCAAATAGTCAA
TCACATTAAATTTCAATATACTGCACTTGCAAACTGACGGcaactactct
tgtctcccgaatagacggggggagTCTGAATATGCAggagggggtaggaa
aattttctaaattctaataagcgggcgGGGGCGATGGAATAAAAGGgcgg
taatttgaagacagaatttttttcaactgatatcaatttcaacaacaaaa
aagaaactttaacaaatgaacaacacctaaaataagaaccaatactaaca
aaaaggaaaatttttacaattttaatgTCTATCTACACTGCAATGAAATA
TTAAATTATGGgggggattttttttctcttaacaattagcggggggacat
ctattcgggagacaagactACGAACCTATTCTACTTTTTCTGGTAACCTT
TGTTTGTTTTAGATAAAGCTGACGAAGCAAACGCACCAATGAAACCGAAG
ATCAACATCAACGCTAAAGATAAGAAATCATTCACTGCTCTTCATCATGC
AGCTAAACGTGGATTTAACGTATGTAGCAAGTTATTTACAACCTCGTTCC
TCGTGTATCccattttttatttactttgctgGTTGACACTACAGATTTGT
AAAACTCGAAGGACTAGATGGCGTGTTTTGACTGAAAATTGTGCCGTAGT
TCGGTAGGATCTTACTACCGAGGTCACgtgatattacaatagaatttcag
tgctTGACCAGTCAGAAGCTTCGCGGCTTATCGAAAACagtagcaacaat
attttttgcgatgttcacttttttttgcttggaaaagcttaaagcattcc
atctagcccttcggacttcACATGCATCTGCGGTTGACGCCAAATCAGAC
AATGCCAGAGTTGGAAACAGTCGATGGAgtcgatttttttttatttgcat
AGACAGATTTCAATTGCTTTCACGGGttccacggccagccggctcggcta
tcttcGAACTGTACGGAACATTCAGTCCAACGCAACAATATTATAGCCAA
GATCATaaatttcctattttttttactttttatcttcTCTTAGGACTGCA
TTAAGGTATTGCTGGAACACAATGCTAATGTCAATATCAAATCAAGTGCT
GGTCAAGAGAATATGACACCACTTGGTTTGGCTGCAGCAAAAGGACATTA
CGAAACAGTCAAATTCCTCCATGAAAATGGTGCTTCACCTGACCTGAAAA
GtataggaatttttttttctgaaaatagaTTTTTTCTAAATCAAAGCTAC
ATGTTCTTTATAACTTGAAATGCAAGAAAGTTGTGTCGAAAACCTTTTTA
ACAATATACTGGTTTAccaaatttaaaagaatttacAGCTCGTTTTGTGC
TAGcaaactttgatttttcaaagccTATAAATATTCTTGTTAGCTAAACT
GACTCAGACGATTATTTTAATATTatcgtcaacatgaaaaatatgagcaa
tctgattggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021340XLOC_021340Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036279-exon-sc0001435-1491911889:6530..6580TCONS_00036279-exon-sc0001435-1491911889:6530..6580Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1510915933:6530..6580TCONS_00036279-exon-sc0001435-1510915933:6530..6580Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1575043694:6530..6580TCONS_00036279-exon-sc0001435-1575043694:6530..6580Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1491911889:7160..7607TCONS_00036279-exon-sc0001435-1491911889:7160..7607Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1510915933:7160..7607TCONS_00036279-exon-sc0001435-1510915933:7160..7607Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1575043694:7160..7607TCONS_00036279-exon-sc0001435-1575043694:7160..7607Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1491911889:10397..10600TCONS_00036279-exon-sc0001435-1491911889:10397..10600Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1510915933:10397..10600TCONS_00036279-exon-sc0001435-1510915933:10397..10600Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1575043694:10397..10600TCONS_00036279-exon-sc0001435-1575043694:10397..10600Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1491911889:11399..11562TCONS_00036279-exon-sc0001435-1491911889:11399..11562Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1510915933:11399..11562TCONS_00036279-exon-sc0001435-1510915933:11399..11562Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1575043694:11399..11562TCONS_00036279-exon-sc0001435-1575043694:11399..11562Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1491911889:11900..12063TCONS_00036279-exon-sc0001435-1491911889:11900..12063Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1510915933:11900..12063TCONS_00036279-exon-sc0001435-1510915933:11900..12063Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1575043694:11900..12063TCONS_00036279-exon-sc0001435-1575043694:11900..12063Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1491911889:16042..16148TCONS_00036279-exon-sc0001435-1491911889:16042..16148Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1510915933:16042..16148TCONS_00036279-exon-sc0001435-1510915933:16042..16148Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1575043694:16042..16148TCONS_00036279-exon-sc0001435-1575043694:16042..16148Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1491911889:16673..17089TCONS_00036279-exon-sc0001435-1491911889:16673..17089Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1510915933:16673..17089TCONS_00036279-exon-sc0001435-1510915933:16673..17089Clytia hemisphaericaexon
TCONS_00036279-exon-sc0001435-1575043694:16673..17089TCONS_00036279-exon-sc0001435-1575043694:16673..17089Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001435supercontigsc0001435:6530..17089 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.130032	3.90142	2.55765	5.08978	6.41441	5.63753	5.74175	4.93036	4.69504	4.85505	4.18623	0	0.0843339	0.082741	0.0845628	0.11781	0.156166	0.204163	0	0	0.0622768	1.14436	3.20985	0	0	0.0328615	0.105412
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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