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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036275 ID=TCONS_00036275|Name=TCONS_00036275|organism=Clytia hemisphaerica|type=transcript|length=1249bp
GGAGACGTGAAATGTGGTCCGCTAGGACATTAAATTTACCAGGAACATGA
AACACCTTGATACTAAAGTTGAAAGTAGCTGAGAGCCAAAAGGCATCTCT
CAGGTGGGACATCATGTCTGGATCCTTAGTGGTACCTTTGTTCAACATTG
CTACCGCTGCTGTGTTGTCGCAGGGAACGTGGACCACCTTATTCTGAAGA
AGGGGAGCCCATCGTTTCAGGGCAAGGGCAACACATAAGGCCTCCTTGTA
ATTGATGTGAGAACCAGAAAAGGGTGGGTAGTCAACCAGGAGATTGGAGT
AGAACCAATCTCCTTGAAACTCAGCTCCAATACCCGTAGAGCATGCATCA
GTATGTAGGTCAACAGCCGGGTGGGGGTCATGAAAACGACAGAACCCATT
GAAGACCTCCAAGAACTGAAGCCACCAATCAATATCCTTGAGAAACTCCC
CACTAAGACGACACTTTGCAGATTGCTTAAGGCAGAGTGTTCATCAAGTC
CAGGATCCTACGAAGAAATGTCCTACCACCAAAGACAACCTTACAGGCCC
AATTTAAGCGTCCGGCTAACTGCTGGAGTTGTCTTTTGGTAGTCCTCGTT
TTTGATCGAAAGGACTGCAAGAAAACCTTGAGGTATGCAAGTTTCTTTGC
GGAGAGAGAAAGGGTTAACTTAACTGTATCAATCTCTACACCCAAGAATA
CTAATTTCTGACAAGGGGGTACTAGTTTGGAGGGGCTGATTGTAAATCCC
AGCTCCAATAAGAGGCTACGTAAGGTCATATAAGCTGCCTCACACTCCTC
CTGGGTTTTCCCGATTACAATAAAATCATCAAGATAGACAACCACATCCT
TGAAACCACGGCGGGACACCATGCGACGAACCGATTTAGTAAGACGATGG
AATATACCTGGGGTACTACTGCCCCCAAAGGGTAAGCGAGTATCAACAAA
GTAGGTAAAGTGATCATCTCCTGTGAACTTCCACTTTAACCCTAGAGCAT
CGTGGTTGGCCAGGTGTACAGGAACAGACCTGTAAGCACGACGAAGGTCA
ACTTTGGCAATAAAATAGTCCCTATCAGTTTGGTGGCATCACTTAGGGAT
TGAAAGGACTGCTTTTAAACAGAAATGTAGGAGTTAACTCCTTTGCCCGG
AGGCATTGAACAGTCATGAATAATGCGAATGTCATCAGAATCTGGCTTTG
GAACAGCTCCAAGTGCACTGACAATTGATGGCTTAGAATTAACAGCAAN Run BLAST on NCBI protein sequence of TCONS_00036275-protein >TCONS_00036275-protein ID=TCONS_00036275-protein|Name=TCONS_00036275-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MVSRRGFKDVVVYLDDFIVIGKTQEECEAAYMTLRSLLLELGFTISPSKL
VPPCQKLVFLGVEIDTVKLTLSLSAKKLAYLKVFLQSFRSKTRTTKRQLQ
QLAGRLNWACKVVFGGRTFLRRILDLMNTLP Run BLAST on NCBI transcript from alignment at sc0001433:54410..55658 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036275 ID=TCONS_00036275|Name=TCONS_00036275|organism=Clytia hemisphaerica|type=transcript|length=1249bp|location=Sequence derived from alignment at sc0001433:54410..55658 (Clytia hemisphaerica)
NTTGCTGTTAATTCTAAGCCATCAATTGTCAGTGCACTTGGAGCTGTTCC
AAAGCCAGATTCTGATGACATTCGCATTATTCATGACTGTTCAATGCCTC
CGGGCAAAGGAGTTAACTCCTACATTTCTGTTTAAAAGCAGTCCTTTCAA
TCCCTAAGTGATGCCACCAAACTGATAGGGACTATTTTATTGCCAAAGTT
GACCTTCGTCGTGCTTACAGGTCTGTTCCTGTACACCTGGCCAACCACGA
TGCTCTAGGGTTAAAGTGGAAGTTCACAGGAGATGATCACTTTACCTACT
TTGTTGATACTCGCTTACCCTTTGGGGGCAGTAGTACCCCAGGTATATTC
CATCGTCTTACTAAATCGGTTCGTCGCATGGTGTCCCGCCGTGGTTTCAA
GGATGTGGTTGTCTATCTTGATGATTTTATTGTAATCGGGAAAACCCAGG
AGGAGTGTGAGGCAGCTTATATGACCTTACGTAGCCTCTTATTGGAGCTG
GGATTTACAATCAGCCCCTCCAAACTAGTACCCCCTTGTCAGAAATTAGT
ATTCTTGGGTGTAGAGATTGATACAGTTAAGTTAACCCTTTCTCTCTCCG
CAAAGAAACTTGCATACCTCAAGGTTTTCTTGCAGTCCTTTCGATCAAAA
ACGAGGACTACCAAAAGACAACTCCAGCAGTTAGCCGGACGCTTAAATTG
GGCCTGTAAGGTTGTCTTTGGTGGTAGGACATTTCTTCGTAGGATCCTGG
ACTTGATGAACACTCTGCCTTAAGCAATCTGCAAAGTGTCGTCTTAGTGG
GGAGTTTCTCAAGGATATTGATTGGTGGCTTCAGTTCTTGGAGGTCTTCA
ATGGGTTCTGTCGTTTTCATGACCCCCACCCGGCTGTTGACCTACATACT
GATGCATGCTCTACGGGTATTGGAGCTGAGTTTCAAGGAGATTGGTTCTA
CTCCAATCTCCTGGTTGACTACCCACCCTTTTCTGGTTCTCACATCAATT
ACAAGGAGGCCTTATGTGTTGCCCTTGCCCTGAAACGATGGGCTCCCCTT
CTTCAGAATAAGGTGGTCCACGTTCCCTGCGACAACACAGCAGCGGTAGC
AATGTTGAACAAAGGTACCACTAAGGATCCAGACATGATGTCCCACCTGA
GAGATGCCTTTTGGCTCTCAGCTACTTTCAACTTTAGTATCAAGGTGTTT
CATGTTCCTGGTAAATTTAATGTCCTAGCGGACCACATTTCACGTCTCC Coding sequence (CDS) from alignment at sc0001433:54410..55658 >TCONS_00036275 ID=TCONS_00036275|Name=TCONS_00036275|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0001433:54410..55658 (Clytia hemisphaerica)
ATGGTGTCCCGCCGTGGTTTCAAGGATGTGGTTGTCTATCTTGATGATTT
TATTGTAATCGGGAAAACCCAGGAGGAGTGTGAGGCAGCTTATATGACCT
TACGTAGCCTCTTATTGGAGCTGGGATTTACAATCAGCCCCTCCAAACTA
GTACCCCCTTGTCAGAAATTAGTATTCTTGGGTGTAGAGATTGATACAGT
TAAGTTAACCCTTTCTCTCTCCGCAAAGAAACTTGCATACCTCAAGGTTT
TCTTGCAGTCCTTTCGATCAAAAACGAGGACTACCAAAAGACAACTCCAG
CAGTTAGCCGGACGCTTAAATTGGGCCTGTAAGGTTGTCTTTGGTGGTAG
GACATTTCTTCGTAGGATCCTGGACTTGATGAACACTCTGCCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036275-exon-sc0001433-1491911889:54410..55658 | TCONS_00036275-exon-sc0001433-1491911889:54410..55658 | Clytia hemisphaerica | exon |
| TCONS_00036275-exon-sc0001433-1510915933:54410..55658 | TCONS_00036275-exon-sc0001433-1510915933:54410..55658 | Clytia hemisphaerica | exon |
| TCONS_00036275-exon-sc0001433-1575043694:54410..55658 | TCONS_00036275-exon-sc0001433-1575043694:54410..55658 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001433 | supercontig | sc0001433:54410..55658 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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