TCONS_00036272 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036272
Unique NameTCONS_00036272
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1181

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036272 ID=TCONS_00036272|Name=TCONS_00036272|organism=Clytia hemisphaerica|type=transcript|length=1181bp
CTATATATTTCATTTGATTCAGGTGTTACAAAACAATGGGAGGCAGATGA
AAGTGTTGTAGATGAAAATGCAAAATACAGTGTCATCAAAGACAAAGAGG
CATATGAAGCAGAAGGAATACGCCTTGTCGAAGAGTCGTTAAAGTCCATA
AAGAATGATAAAGACCTTCAAGGTCGCGAACCAGGGAAAACCGTATCAAA
GCTAGCGGAACCGATGCTTTCCATAgataaaaatgaattcaaaaacattt
ctgaTTATTTCTGTAACAAAATGTACCTGTATGTCAAGTTTCATAAACAG
ATGAAAGTTGATTACCTCTCAGCAAAATTCCATAATATGGCCCTGGATGA
TGGAAATGATAATCCATTTTTTCAATTAATCGAAAAGTCTTTCCCACAAA
CACAACCGTCAACAATGTTTCAAATATACcagtattttttaaaacactTT
CTTCAAAAGACTTTAGCACTTTGTATTAAGCCAAACAAGCAAGCATTGGA
TATAAGCAGAATTTCAATGACTCAGGACGAAGAATCTACTCTCAGATATG
TTGCTGGATTCCTCATATcttctttgaaaagaaaattgagagGGAAAACC
TTTTCTCAAGCTAAAGCAGTCGTTGCCCTACTTGAACAGCTTGCTCTCAA
AATTGATGAAGGTCTTGGCGGCCAAATTTCACTAAATGACTTTACTTGTC
ATTGGGTGGACCAGATCAATCGAGCTGGGCTCATGAAAATCACCGATGGC
TTTTACTCGTTTGTAAAGCTAATGGAAAATTTGTCTAGGGTTATTTTGAA
TAAGAACACCTTAATAAGGTATTGTTGTAGTGACTTGAGGAAAGTGGTAA
TCGATAGATTTGACAAGAATGTCATgttgaaagaaaaatggaaTGCATTA
ACAATTGGATTGAGAAATAGAGAGATGGCAAACCAAATCCTGGAAGCTAT
CTTCTGGAAATGGGCAAATTTGAGAGTCAATTCCTTTTTAAAACACTGGT
TAGAATTACGCAGAAATGAATTGTTTAAAAAGGGAGAGGAAGTTGCAGAA
AAAGCTGCACCAGCAATGCGAAAGGCATTGAAAGCTAAAAGAAGGTTAAA
GCTAGAAACTCAAACAACTCCCATAAAAAGTTCTTCAACAAAACTTGCTG
CAAAGAAAACTAttgcaaaatataaaaagaa
Run BLAST on NCBI

protein sequence of TCONS_00036272-protein

>TCONS_00036272-protein ID=TCONS_00036272-protein|Name=TCONS_00036272-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp
LYISFDSGVTKQWEADESVVDENAKYSVIKDKEAYEAEGIRLVEESLKSI
KNDKDLQGREPGKTVSKLAEPMLSIDKNEFKNISDYFCNKMYLYVKFHKQ
MKVDYLSAKFHNMALDDGNDNPFFQLIEKSFPQTQPSTMFQIYQYFLKHF
LQKTLALCIKPNKQALDISRISMTQDEESTLRYVAGFLISSLKRKLRGKT
FSQAKAVVALLEQLALKIDEGLGGQISLNDFTCHWVDQINRAGLMKITDG
FYSFVKLMENLSRVILNKNTLIRYCCSDLRKVVIDRFDKNVMLKEKWNAL
TIGLRNREMANQILEAIFWKWANLRVNSFLKHWLELRRNELFKKGEEVAE
KAAPAMRKALKAKRRLKLETQTTPIKSSSTKLAAKKTIAKYKK
Run BLAST on NCBI

transcript from alignment at sc0001433:23224..25296-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036272 ID=TCONS_00036272|Name=TCONS_00036272|organism=Clytia hemisphaerica|type=transcript|length=2073bp|location=Sequence derived from alignment at sc0001433:23224..25296- (Clytia hemisphaerica)
CTATATATTTCATTTGATTCAGGTGTTACAAAACAATGGGAGGCAGATGA
AAGTGTTGTAGATGAAAATGCAAAATACAGTGTCATCAAAGACAAAGAGG
GTACGTTTTCTTTTCAAATATAGTCTTTATCTTTCTTACAAATTCCAGCA
AATTCAATGTTTGATTATAAATTGAGTTAAAACAATATAGCTGGATAAAG
CATGGCTAAAATCCGATAAAGTATGGCCAGTTCACGGTGTTGTTGCTATT
ACTGTAAATGTTTTTTTATTCAATTTTATCAATTGTATAGGTTTCAACAT
TTAGTATTTAGTTGACACTTCAGCAAATATTAAAGCCTGATATTGTTTAT
AATTTTCCAATTTTCCTTTCAGCATATGAAGCAGAAGGAATACGCCTTGT
CGAAGAGTCGTTAAAGTCCATAAAGAATGATAAAGACCTTCAAGGTCGCG
AACCAGGGAAAACCGTATCAAAGCTAGCGGAATCGATGCTTTCCATAGAT
AAAAATGAACTCAAAAACATTTCTGATTATTTCTGTAACAAAATGTACCT
GTATGTCAAGTTTCATAAACAGATGAAAGCTGATTACCTCTCAATTAATC
GAAAAGTCTTTCCCACAAATACAACCGTCAACAATGTTTCAAATATACCA
GTATTTTTTAAAACACTTTCTTCAAAAGACTTTAGCACTTTGTATTAAGC
CAAACAAGCAAACATTGGATATAAGCAGAATTTCAATTACTCGAGACTAA
GAATCTACTCTCAGATACCTTATTGGTATATATTTTCGCGTGTTACAAAT
TTTCGNATAGCTGGATAAAGCATGGCTAAAATCCGATAAAGTATGGCCAG
TTCACGGTGTTGTTGCTATTACTGTAAATGTTTTTTTATTCAATTTTATC
AATTGTATAGGTTTCAACATTTAGTATTTAGTTGACACTTCAGCAAATAT
TAAAGCCTGATATTGTTTATAATTTTCCAATTTTCCTTTCAGCATATGAA
GCAGAAGGAATACGCCTTGTCGAAGAGTCGTTAAAGTCCATAAAGAATGA
TAAAGACCTTCAAGGTCGCGAACCAGGGAAAACCGTATCAAAGCTAGCGG
AACCGATGCTTTCCATAGATAAAAATGAATTCAAAAACATTTCTGATTAT
TTCTGTAACAAAATGTACCTGTATGTCAAGTTTCATAAACAGATGAAAGT
TGATTACCTCTCAGCAAAATTCCATAATATGGCCCTGGATGATGGAAATG
ATAATCCATTTTTTCAATTAATCGAAAAGTCTTTCCCACAAACACAACCG
TCAACAATGTTTCAAATATACCAGTATTTTTTAAAACACTTTCTTCAAAA
GACTTTAGCACTTTGTATTAAGCCAAACAAGCAAGCATTGGATATAAGCA
GAATTTCAATGACTCAGGACGAAGAATCTACTCTCAGATATGTTGCTGGA
TTCCTCATATCTTCTTTGAAAAGAAAATTGAGAGGGAAAACCTTTTCTCA
AGCTAAAGCAGTCGTTGCCCTACTTGAACAGCTTGCTCTCAAAATTGATG
AAGGTCTTGGCGGCCAAATTTCACTAAATGACTTTACTTGTCATTGGGTG
GACCAGATCAATCGAGCTGGGCTCATGAAAATCACCGATGGCTTTTACTC
GTTTGTAAAGCTAATGGAAAATTTGTCTAGGGTTATTTTGAATAAGAACA
CCTTAATAAGGTATTGTTGTAGTGACTTGAGGAAAGTGGTAATCGATAGA
TTTGACAAGAATGTCATGTTGAAAGAAAAATGGAATGCATTAACAATTGG
ATTGAGAAATAGAGAGATGGCAAACCAAATCCTGGAAGCTATCTTCTGGA
AATGGGCAAATTTGAGAGTCAATTCCTTTTTAAAACACTGGTTAGAATTA
CGCAGAAATGAATTGTTTAAAAAGGGAGAGGAAGTTGCAGAAAAAGCTGC
ACCAGCAATGCGAAAGGCATTGAAAGCTAAAAGAAGGTTAAAGCTAGAAA
CTCAAACAACTCCCATAAAAAGTTCTTCAACAAAACTTGCTGCAAAGAAA
ACTATTGCAAAATATAAAAAGAA

Coding sequence (CDS) from alignment at sc0001433:23224..25296-

>TCONS_00036272 ID=TCONS_00036272|Name=TCONS_00036272|organism=Clytia hemisphaerica|type=CDS|length=2358bp|location=Sequence derived from alignment at sc0001433:23224..25296- (Clytia hemisphaerica)
CATATGAAGCAGAAGGAATACGCCTTGTCGAAGAGTCGTTAAAGTCCATA
AAGAATGATAAAGACCTTCAAGGTCGCGAACCAGGGAAAACCGTATCAAA
GCTAGCGGAACCGATGCTTTCCATAGATAAAAATGAATTCAAAAACATTT
CTGATTATTTCTGTAACAAAATGTACCTGTATGTCAAGTTTCATAAACAG
ATGAAAGTTGATTACCTCTCAGCAAAATTCCATAATATGGCCCTGGATGA
TGGAAATGATAATCCATTTTTTCAATTAATCGAAAAGTCTTTCCCACAAA
CACAACCGTCAACAATGTTTCAAATATACCAGTATTTTTTAAAACACTTT
CTTCAAAAGACTTTAGCACTTTGTATTAAGCCAAACAAGCAAGCATTGGA
TATAAGCAGAATTTCAATGACTCAGGACGAAGAATCTACTCTCAGATATG
TTGCTGGATTCCTCATATCTTCTTTGAAAAGAAAATTGAGAGGGAAAACC
TTTTCTCAAGCTAAAGCAGTCGTTGCCCTACTTGAACAGCTTGCTCTCAA
AATTGATGAAGGTCTTGGCGGCCAAATTTCACTAAATGACTTTACTTGTC
ATTGGGTGGACCAGATCAATCGAGCTGGGCTCATGAAAATCACCGATGGC
TTTTACTCGTTTGTAAAGCTAATGGAAAATTTGTCTAGGGTTATTTTGAA
TAAGAACACCTTAATAAGGTATTGTTGTAGTGACTTGAGGAAAGTGGTAA
TCGATAGATTTGACAAGAATGTCATGTTGAAAGAAAAATGGAATGCATTA
ACAATTGGATTGAGAAATAGAGAGATGGCAAACCAAATCCTGGAAGCTAT
CTTCTGGAAATGGGCAAATTTGAGAGTCAATTCCTTTTTAAAACACTGGT
TAGAATTACGCAGAAATGAATTGTTTAAAAAGGGAGAGGAAGTTGCAGAA
AAAGCTGCACCAGCAATGCGAAAGGCATTGAAAGCTAAAAGAAGGTTAAA
GCTAGAAACTCAAACAACTCCCATAAAAAGTTCTTCAACAAAACTTGCTG
CAAAGAAAACTATTGCAAAATATAAAAAGCTATATATTTCATTTGATTCA
GGTGTTACAAAACAATGGGAGGCAGATGAAAGTGTTGTAGATGAAAATGC
AAAATACAGTGTCATCAAAGACAAAGAGGCATATGAAGCAGAAGGAATAC
GCCTTGTCGAAGAGTCGTTAAAGTCCATAAAGAATGATAAAGACCTTCAA
GGTCGCGAACCAGGGAAAACCGTATCAAAGCTAGCGGAACCGATGCTTTC
CATAGATAAAAATGAATTCAAAAACATTTCTGATTATTTCTGTAACAAAA
TGTACCTGTATGTCAAGTTTCATAAACAGATGAAAGTTGATTACCTCTCA
GCAAAATTCCATAATATGGCCCTGGATGATGGAAATGATAATCCATTTTT
TCAATTAATCGAAAAGTCTTTCCCACAAACACAACCGTCAACAATGTTTC
AAATATACCAGTATTTTTTAAAACACTTTCTTCAAAAGACTTTAGCACTT
TGTATTAAGCCAAACAAGCAAGCATTGGATATAAGCAGAATTTCAATGAC
TCAGGACGAAGAATCTACTCTCAGATATGTTGCTGGATTCCTCATATCTT
CTTTGAAAAGAAAATTGAGAGGGAAAACCTTTTCTCAAGCTAAAGCAGTC
GTTGCCCTACTTGAACAGCTTGCTCTCAAAATTGATGAAGGTCTTGGCGG
CCAAATTTCACTAAATGACTTTACTTGTCATTGGGTGGACCAGATCAATC
GAGCTGGGCTCATGAAAATCACCGATGGCTTTTACTCGTTTGTAAAGCTA
ATGGAAAATTTGTCTAGGGTTATTTTGAATAAGAACACCTTAATAAGGTA
TTGTTGTAGTGACTTGAGGAAAGTGGTAATCGATAGATTTGACAAGAATG
TCATGTTGAAAGAAAAATGGAATGCATTAACAATTGGATTGAGAAATAGA
GAGATGGCAAACCAAATCCTGGAAGCTATCTTCTGGAAATGGGCAAATTT
GAGAGTCAATTCCTTTTTAAAACACTGGTTAGAATTACGCAGAAATGAAT
TGTTTAAAAAGGGAGAGGAAGTTGCAGAAAAAGCTGCACCAGCAATGCGA
AAGGCATTGAAAGCTAAAAGAAGGTTAAAGCTAGAAACTCAAACAACTCC
CATAAAAAGTTCTTCAACAAAACTTGCTGCAAAGAAAACTATTGCAAAAT
ATAAAAAGCTATATATTTCATTTGATTCAGGTGTTACAAAACAATGGGAG
GCAGATGAAAGTGTTGTAGATGAAAATGCAAAATACAGTGTCATCAAAGA
CAAAGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021334XLOC_021334Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036272-proteinTCONS_00036272-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036272-exon-sc0001433-1575043694:25197..25296TCONS_00036272-exon-sc0001433-1575043694:25197..25296Clytia hemisphaericaexon
TCONS_00036272-exon-sc0001433-1575043694:23224..24304TCONS_00036272-exon-sc0001433-1575043694:23224..24304Clytia hemisphaericaexon
TCONS_00036272-exon-sc0001433-1510915933:25197..25296TCONS_00036272-exon-sc0001433-1510915933:25197..25296Clytia hemisphaericaexon
TCONS_00036272-exon-sc0001433-1510915933:23224..24304TCONS_00036272-exon-sc0001433-1510915933:23224..24304Clytia hemisphaericaexon
TCONS_00036272-exon-sc0001433-1491911889:25197..25296TCONS_00036272-exon-sc0001433-1491911889:25197..25296Clytia hemisphaericaexon
TCONS_00036272-exon-sc0001433-1491911889:23224..24304TCONS_00036272-exon-sc0001433-1491911889:23224..24304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001433supercontigsc0001433:23224..25296 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.547496	0.284744	0.247961	0.323455	2.16577	1.36135	0.938523	0.702907	0.64591	1.21915	0.961457	0.729259	0.679695	0.857128	1.18137	1.82384	1.45221	1.48847	2.0952	3.49172	2.32914	1.96231	1.0044	1.6741	0	0.069949	2.30223	1.92287	1.0128	0.660403
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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