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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036270 ID=TCONS_00036270|Name=TCONS_00036270|organism=Clytia hemisphaerica|type=transcript|length=328bp
TTTGTACTGCAGTCCTATTGATAATTACATTTTATCTTTGAATAACATTA
TAActgtttcattaatttttaggaaaatcacgAACATGGGAGACACAATA
TCCCAATCTATCAGGAATGTTGGTGAACTAGTTAAAAGCCAAGGGGAAAA
GATTGAAGCCCTCGAAACAAAACTTCAATCCATCGAAAACAAATTGAGCC
AGCACCTGGAAACGATTAAAAAGTCAACAAAAGTGActgttccaaaattt
tttcagAAAAGGATCGTGCGGACTTATGGTTTGTGCCCAGAGGAAGAAAA
ATGGGATTTACTTGAACAATGGAATTCA Run BLAST on NCBI protein sequence of TCONS_00036270-protein >TCONS_00036270-protein ID=TCONS_00036270-protein|Name=TCONS_00036270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
LYCSPIDNYILSLNNIITVSLIFRKITNMGDTISQSIRNVGELVKSQGEK
IEALETKLQSIENKLSQHLETIKKSTKVTVPKFFQKRIVRTYGLCPEEEK
WDLLEQWNS Run BLAST on NCBI transcript from alignment at sc0001433:17218..18734- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036270 ID=TCONS_00036270|Name=TCONS_00036270|organism=Clytia hemisphaerica|type=transcript|length=1517bp|location=Sequence derived from alignment at sc0001433:17218..18734- (Clytia hemisphaerica)
TTTGTACTGCAGTCCTATTGATAATTACATTTTATCTTTGAATAACATTA
TAACTGTTTCATTAATTTTTAGGAAAATCACGAACATGGGAGACACAATA
TCCCAATCTATCAGGAATGTTGGTGAACTAGTTAAAAGCCAAGGGGAAAA
GATTGAAGCCCTCGAAACAAAACTTCAATCCATCGAAAACAAATTGAGCC
AGCACCTGGAAACGATTAAAAAGTCAACAAAAGTGACTGTTCCAAAATTT
TTTCAGGTAAGACTTTGCAGGACTTTGATTCATTACTCTGAATTAATATT
ATTAAAGACTTTCCAATTGTTTAAATTTAGTTTTGTCACTAACTTTTTCA
TTTATCATCGTCACTTGAAGGAGCAAAAAAAAAACCCACATTTGTAGTTT
TGGTCCTCTGTTTTAGGGTCAGGCCTGGAGTTGCTTGTAAGGTTGCTTAT
GAACCAAAAGCTTAAAATGGGCTAAAAACATTTTTCATTCTTAAATTGAC
AATAAAGGCATTTCTCAGATTTGCAAGGCCTTCTGTTATTTTTTATTGCA
GAAGAAAAAAGTTGCTAATTTGGTTTTGAGGTTTTTTTGAGATTTTACTG
AATTTAAAAGAAGGGGGGCTTGTGAAAATTTCAAATAAAAGGGGTGGCTT
GGACAAAAAGAGGGGGCTTGGAAGATTTGGCAATTTGCAAAAGAGTGTTT
TCCATTCATTTTTAAATTTCTCAACAATTATTATATTTCCATTCATTTGA
ATGAAGCAAAAACTCTTCTTTCTACAACTCTTGATGGAGTATGTTGCTTT
TTCAACCTTTGCAAGACAGCTGCTTTTGTTTTCCACCACTTATTTCACAA
AAGATCGAAACAGAGGGGGGTTGAACTTAAACCTGGGAAAAAGAGGGGGG
TTGAGGAATTTTCATTTTTAAGAGGGGGTTGAGCTAAAAGAGGGGTGTCA
TTTTTAAGGGGGGCTTGATACCCCTCTGCCCACTATGATTTTGAGACCTA
ATCCCTTTAAAGTAGGGCTATCTTGGGATTGGTGACACAGGGGTGAGTTA
AAATTAACTTTTGGAAAGTTTTATGCTAGAAATTTTGAAATTTTAATAGC
TCATAGACATTATTTTCTTGTTTAGAAAAGGATCGTGCGGACTTATGGTT
TGTGCCCAGAGGAGAAAAAATGGGATTTACTCNGAGTTGAAATTAAAGTT
TTATGCTAGAAATTTTGAAATTTTCATAGCTCATAGACATTATTTTCTTG
TTTAGAAAAGGATCGTGCGGACTTATGGTTTGTGCCCAGAGGAAGAAAAA
TGGGATTTACTTGAACAGTAAGTTGTATAATTCTTTGATTTGTTTGCATT
TTAGGTCCAATTTATAACAGTTTGGTAAACTTTGTAACAATTCAAGTCTT
ACAATTTAAAGTATCTATTCGAGTGAAACGAACAGTCATTTTGGTAGTTA
TTTTGACGTTGTATCATCTTTTGATTAACAAAGTATTTTTTCTTTTGTTT
CTGTTAGATGGAATTCA Coding sequence (CDS) from alignment at sc0001433:17218..18734- >TCONS_00036270 ID=TCONS_00036270|Name=TCONS_00036270|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at sc0001433:17218..18734- (Clytia hemisphaerica)
ATGGAATTCAAAAAGGATCGTGCGGACTTATGGTTTGTGCCCAGAGGAAG
AAAAATGGGATTTACTTGAACATTGTACTGCAGTCCTATTGATAATTACA
TTTTATCTTTGAATAACATTATAACTGTTTCATTAATTTTTAGGAAAATC
ACGAACATGGGAGACACAATATCCCAATCTATCAGGAATGTTGGTGAACT
AGTTAAAAGCCAAGGGGAAAAGATTGAAGCCCTCGAAACAAAACTTCAAT
CCATCGAAAACAAATTGAGCCAGCACCTGGAAACGATTAAAAAGTCAACA
AAAGTGACTGTTCCAAAATTTTTTCAGATGGAATTCAAAAAGGATCGTGC
GGACTTATGGTTTGTGCCCAGAGGAAGAAAAATGGGATTTACTTGAACAT
TGTACTGCAGTCCTATTGATAATTACATTTTATCTTTGAATAACATTATA
ACTGTTTCATTAATTTTTAGGAAAATCACGAACATGGGAGACACAATATC
CCAATCTATCAGGAATGTTGGTGAACTAGTTAAAAGCCAAGGGGAAAAGA
TTGAAGCCCTCGAAACAAAACTTCAATCCATCGAAAACAAATTGAGCCAG
CACCTGGAAACGATTAAAAAGTCAACAAAAGTGACTGTTCCAAAATTTTT
TCAGATGGAATTCAAAAAGGATCGTGCGGACTTATGGTTTGTGCCCAGAG
GAAGAAAAATGGGATTTACTTGAACATTGTACTGCAGTCCTATTGATAAT
TACATTTTATCTTTGAATAACATTATAACTGTTTCATTAATTTTTAGGAA
AATCACGAACATGGGAGACACAATATCCCAATCTATCAGGAATGTTGGTG
AACTAGTTAAAAGCCAAGGGGAAAAGATTGAAGCCCTCGAAACAAAACTT
CAATCCATCGAAAACAAATTGAGCCAGCACCTGGAAACGATTAAAAAGTC
AACAAAAGTGACTGTTCCAAAATTTTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036270-exon-sc0001433-1575043694:18479..18734 | TCONS_00036270-exon-sc0001433-1575043694:18479..18734 | Clytia hemisphaerica | exon |
| TCONS_00036270-exon-sc0001433-1575043694:17418..17479 | TCONS_00036270-exon-sc0001433-1575043694:17418..17479 | Clytia hemisphaerica | exon |
| TCONS_00036270-exon-sc0001433-1575043694:17218..17227 | TCONS_00036270-exon-sc0001433-1575043694:17218..17227 | Clytia hemisphaerica | exon |
| TCONS_00036270-exon-sc0001433-1510915933:18479..18734 | TCONS_00036270-exon-sc0001433-1510915933:18479..18734 | Clytia hemisphaerica | exon |
| TCONS_00036270-exon-sc0001433-1510915933:17418..17479 | TCONS_00036270-exon-sc0001433-1510915933:17418..17479 | Clytia hemisphaerica | exon |
| TCONS_00036270-exon-sc0001433-1510915933:17218..17227 | TCONS_00036270-exon-sc0001433-1510915933:17218..17227 | Clytia hemisphaerica | exon |
| TCONS_00036270-exon-sc0001433-1491911889:18479..18734 | TCONS_00036270-exon-sc0001433-1491911889:18479..18734 | Clytia hemisphaerica | exon |
| TCONS_00036270-exon-sc0001433-1491911889:17418..17479 | TCONS_00036270-exon-sc0001433-1491911889:17418..17479 | Clytia hemisphaerica | exon |
| TCONS_00036270-exon-sc0001433-1491911889:17218..17227 | TCONS_00036270-exon-sc0001433-1491911889:17218..17227 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001433 | supercontig | sc0001433:17218..18734 - |
Blast
The following BLAST results are available for this feature:
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