|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036269 ID=TCONS_00036269|Name=TCONS_00036269|organism=Clytia hemisphaerica|type=transcript|length=1640bp
Gcaagatattttttaaaattttacaattcactcaaaaagttttcaataaa
CGTAATCATAACAATAACACTTTACTCATATAATAACAACTGCCAATCCA
TTGTCATAGAAAGTTTATTGCGACTGGGAACTTTCAGAGTCACTGTATAT
AACacactttcttctctttttggGCTTTGGAGAAGCACTTTGGTTTATGT
TAAACGTACAATTATTGAATACATTCGCGTTCGATGAACTTTGAGGTTGC
ACTGACTGCATAAAAGATGATTGAGATAGCATTGCATTGATAGGACGTTT
TCCTGAAATTGCATTCGACATTCTTTTGAACTCTTGTTGATCTCCAGGGT
CGTAGTTCGATAATCCTTTGGTAGAAGTGTGACCAGTAACTTTGATGATT
GCGGTCTCAGGGATTTCtgcttctttcaactttttaaccGTGTTCTTACG
CAGACTGTGATTAGTTAGATTTTCATCTAAAGAAATTTCAGTGTCAGAAA
TCAGTGCTTTCATAAAGGAGGAAATTGTATTTTTCCCAACAGGAGATGTA
GTGTACCATACACTGGAGTTAGTAAAGTTAGCCTTTGGTGTCAAATAGAA
TCTTCctgtttttctcaaagaatCAGGACGTTTCGAAATGTAATATTCGA
GTAATTTCACTGGACAACGGTCTCCATCAGTCGAGAACATTTTTGGATTT
GTTACTCTGGGTTTGTGGTGTAGTCCTTTGTATCTTGTTTTGGTAGGATC
TTCTAAAAATTCTACATACTTTTCTCCACTTTCATCCGTTTTAAACAAGA
AATTATCCATCGACATAGTTGTGTGCTCTTGGCGGCCTCTCAATCCAAAA
TGCTGTGTGGTAAGAAACCAGACTGTATGGAGTAAAGCCTTAGGGTTGGT
TTTGCCTAACTTTCCAACGTTCCAAAGGATTTCCTCTTCTTTGTTAGTTA
AAGCACGGCTTGCGTTTGGTCTTCGACCTAGTCCATTTTCTCTGAGTGTT
CTTGCTTTTCCTTCGAGAATCTTGTTACATTTAGTGAACTCAATATCAGT
AATAATTGATTTTGGATAGTTCTTATCTTTCAAATATCGATATAAGCTGG
CCTGCATGACACGAAGGCTGTCAGGTTCATATTCTTTACCATCCTTTTTC
GTCAGTTCAGCGTAAAATTGAGACAGAACATCGTCCAATTCGTTTGCAGT
ATAATTTTTAAGGTCTGAtttcttgtttctttctttgGCCAATGATTGAT
AAGCATTTAACCAAGTCGATGTCGATCGTCTTGTATTCTTGCTCTCAGAT
TTCTCACTCAATTTCTGCAGCTCTTCTTCACTCAACAGTTTGAATCTGCC
CTTcgccattttatttttattttgtttggtttgctaatcacaacaaaaaa
caattttttttgatggaacaaaaaacattcgaaaatctgAAAAGATTCGA
ATTCGAATCTTTTAGGCACTGtctacattttgataaaaataaaatgcgGG
CCGATTACNcaacaaaaaacaatttatttttgatggaacaaaaaacattc
gaaaatctgAAAAGATTCGAATTCGAATCTTTTAGGCACTGTCTACATTG
TGATAAAAATTAAATGCGGGCCGATTACAAGAGCGGGCAA Run BLAST on NCBI transcript from alignment at sc0001433:10042..11681+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036269 ID=TCONS_00036269|Name=TCONS_00036269|organism=Clytia hemisphaerica|type=transcript|length=1640bp|location=Sequence derived from alignment at sc0001433:10042..11681+ (Clytia hemisphaerica)
Gcaagatattttttaaaattttacaattcactcaaaaagttttcaataaa
CGTAATCATAACAATAACACTTTACTCATATAATAACAACTGCCAATCCA
TTGTCATAGAAAGTTTATTGCGACTGGGAACTTTCAGAGTCACTGTATAT
AACacactttcttctctttttggGCTTTGGAGAAGCACTTTGGTTTATGT
TAAACGTACAATTATTGAATACATTCGCGTTCGATGAACTTTGAGGTTGC
ACTGACTGCATAAAAGATGATTGAGATAGCATTGCATTGATAGGACGTTT
TCCTGAAATTGCATTCGACATTCTTTTGAACTCTTGTTGATCTCCAGGGT
CGTAGTTCGATAATCCTTTGGTAGAAGTGTGACCAGTAACTTTGATGATT
GCGGTCTCAGGGATTTCtgcttctttcaactttttaaccGTGTTCTTACG
CAGACTGTGATTAGTTAGATTTTCATCTAAAGAAATTTCAGTGTCAGAAA
TCAGTGCTTTCATAAAGGAGGAAATTGTATTTTTCCCAACAGGAGATGTA
GTGTACCATACACTGGAGTTAGTAAAGTTAGCCTTTGGTGTCAAATAGAA
TCTTCctgtttttctcaaagaatCAGGACGTTTCGAAATGTAATATTCGA
GTAATTTCACTGGACAACGGTCTCCATCAGTCGAGAACATTTTTGGATTT
GTTACTCTGGGTTTGTGGTGTAGTCCTTTGTATCTTGTTTTGGTAGGATC
TTCTAAAAATTCTACATACTTTTCTCCACTTTCATCCGTTTTAAACAAGA
AATTATCCATCGACATAGTTGTGTGCTCTTGGCGGCCTCTCAATCCAAAA
TGCTGTGTGGTAAGAAACCAGACTGTATGGAGTAAAGCCTTAGGGTTGGT
TTTGCCTAACTTTCCAACGTTCCAAAGGATTTCCTCTTCTTTGTTAGTTA
AAGCACGGCTTGCGTTTGGTCTTCGACCTAGTCCATTTTCTCTGAGTGTT
CTTGCTTTTCCTTCGAGAATCTTGTTACATTTAGTGAACTCAATATCAGT
AATAATTGATTTTGGATAGTTCTTATCTTTCAAATATCGATATAAGCTGG
CCTGCATGACACGAAGGCTGTCAGGTTCATATTCTTTACCATCCTTTTTC
GTCAGTTCAGCGTAAAATTGAGACAGAACATCGTCCAATTCGTTTGCAGT
ATAATTTTTAAGGTCTGAtttcttgtttctttctttgGCCAATGATTGAT
AAGCATTTAACCAAGTCGATGTCGATCGTCTTGTATTCTTGCTCTCAGAT
TTCTCACTCAATTTCTGCAGCTCTTCTTCACTCAACAGTTTGAATCTGCC
CTTcgccattttatttttattttgtttggtttgctaatcacaacaaaaaa
caattttttttgatggaacaaaaaacattcgaaaatctgAAAAGATTCGA
ATTCGAATCTTTTAGGCACTGtctacattttgataaaaataaaatgcgGG
CCGATTACNcaacaaaaaacaatttatttttgatggaacaaaaaacattc
gaaaatctgAAAAGATTCGAATTCGAATCTTTTAGGCACTGTCTACATTG
TGATAAAAATTAAATGCGGGCCGATTACAAGAGCGGGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036269-exon-sc0001433-1491911889:10042..11681 | TCONS_00036269-exon-sc0001433-1491911889:10042..11681 | Clytia hemisphaerica | exon |
| TCONS_00036269-exon-sc0001433-1510915933:10042..11681 | TCONS_00036269-exon-sc0001433-1510915933:10042..11681 | Clytia hemisphaerica | exon |
| TCONS_00036269-exon-sc0001433-1575043694:10042..11681 | TCONS_00036269-exon-sc0001433-1575043694:10042..11681 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001433 | supercontig | sc0001433:10042..11681 + |
Blast
BLAST of TCONS_00036269 vs. Swiss-Prot (Human)
Match: ZMYM3 (Zinc finger MYM-type protein 3 OS=Homo sapiens GN=ZMYM3 PE=1 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 3.424e-23 Identity = 81/272 (29.78%), Postives = 128/272 (47.06%), Query Frame = -3
Query: 484 KSDLKNYTANELDDVLSQFYAELTKKDGKEYEPDSLRVMQASLYRYLKDKNYPKSIITDIEF----TKCNKILEGKARTLRENGLGRRPNASRALTNKEEEILWNVGKLGKTNPKALLHTVWFLTTQHFGLRGRQEHTTMSMDNFLFK----TDESGEKYVEFLEDPTKTRYKGL--HHKPRVTNPKMFSTDGD--------------RCPVKLLEYYISKRPDSLR-KTGRFYLTP-KANFTNSSVWYTTSPVGKNTISSFMKALISDTEI 1221
K D+ +A EL+ L+QF E+T+ +G+ YEPDS+ + + +YL + N +I TD+ + + NK L TL N + + EEE LW +LG +P LL+T+ F T+ FGL+ +EH +S N + + T G V RY K R T P + + RCPVK E+Y+SK P+SLR + FYL P ++ S +WY+ P+ ++ + S + +++ EI
Sbjct: 1100 KEDILACSAAELNYGLAQFVREITRPNGERYEPDSIYYLCLGIQQYLLENNRMVNIFTDLYYLTFVQELNKSLSTWQPTLLPN--------NTVFSRVEEEHLWECKQLGVYSPFVLLNTLMFFNTKFFGLQTAEEHMQLSFTNVVRQSRKCTTPRGTTKV------VSIRYYAPVRQRKGRDTGPGKRKREDEAPILEQRENRMNPLRCPVKFYEFYLSKCPESLRTRNDVFYLQPERSCIAESPLWYSVIPMDRSMLESMLNRILAVREI 1357
The following BLAST results are available for this feature:
|
