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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00036268 ID=TCONS_00036268|Name=TCONS_00036268|organism=Clytia hemisphaerica|type=transcript|length=995bp
Gcaagatattttttaaaattttacaattcactcaaaaagttttcaataaa
CGTAATCATAACAATAACACTTTACTCATATAATAACAACTGCCAATCCA
TTGTCATAGAAAGTTTATTGCGACTGGGAACTTTCAGAGTCACTGTATAT
AACacactttcttctctttttggGCTTTGGAGAAGCACTTTGGTTTATGT
TAAACGTACAATTATTGAATACATTCGCGTTCGATGAACTTTGAGGTTGC
ACTGACTGCATAAAAGATGATTGAGATAGCATTGCATTGATAGGACGTTT
TCCTGAAATTGCATTCGACATTCTTTTGAACTCTTGTTGATCTCCAGGGT
CGTAGTTCGATAATCCTTTGGTAGAAGTGTGACCAGTAACTTTGATGATT
GCGGTCTCAGGGATTTCtgcttctttcaactttttaaccGTGTTCTTACG
CAGACTGTGATTAGTTAGATTTTCATCTAAAGAAATTTCAGTGTCAGAAA
TCAGTGCTTTCATAAAGGAGGAAATTGTATTTTTCCCAACAGGAGATGTA
GTGTACCATACACTGGAGTTAGTAAAGTTAGCCTTTGGTGTCAAATAGAA
TCTTCctgtttttctcaaagaatCAGGACGTTTCGAAATGTAATATTCGA
GTAATTTCACTGGACAACGGTCTCCATCAGTCGAGAACATTTTTGGATTT
GTTACTCTGGGTTTGTGGTGTAGTCCTTTGTATCTTGTTTTGGTAGGATC
TTCTAAAAATTCTACATACTTTTCTCCACTTTCATCCGTTTTAAACAAGA
AATTATCCATCGTCCAATTCGTTTGCAGTATAATTTTTAAGGTCTGAttt
cttgtttctttctttgGCCAATGATTGATAAGCATTTAACCAAGTCGATG
TCGATCGTCTTGTATTCTTGCTCTCAGATTTCTCACTCAATTTCTGCAGC
TCTTCTTCACTCAACAGTTTGAATCTGCCCTTcgccattttattt Run BLAST on NCBI transcript from alignment at sc0001433:10042..11407+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00036268 ID=TCONS_00036268|Name=TCONS_00036268|organism=Clytia hemisphaerica|type=transcript|length=1366bp|location=Sequence derived from alignment at sc0001433:10042..11407+ (Clytia hemisphaerica)
Gcaagatattttttaaaattttacaattcactcaaaaagttttcaataaa
CGTAATCATAACAATAACACTTTACTCATATAATAACAACTGCCAATCCA
TTGTCATAGAAAGTTTATTGCGACTGGGAACTTTCAGAGTCACTGTATAT
AACacactttcttctctttttggGCTTTGGAGAAGCACTTTGGTTTATGT
TAAACGTACAATTATTGAATACATTCGCGTTCGATGAACTTTGAGGTTGC
ACTGACTGCATAAAAGATGATTGAGATAGCATTGCATTGATAGGACGTTT
TCCTGAAATTGCATTCGACATTCTTTTGAACTCTTGTTGATCTCCAGGGT
CGTAGTTCGATAATCCTTTGGTAGAAGTGTGACCAGTAACTTTGATGATT
GCGGTCTCAGGGATTTCtgcttctttcaactttttaaccGTGTTCTTACG
CAGACTGTGATTAGTTAGATTTTCATCTAAAGAAATTTCAGTGTCAGAAA
TCAGTGCTTTCATAAAGGAGGAAATTGTATTTTTCCCAACAGGAGATGTA
GTGTACCATACACTGGAGTTAGTAAAGTTAGCCTTTGGTGTCAAATAGAA
TCTTCctgtttttctcaaagaatCAGGACGTTTCGAAATGTAATATTCGA
GTAATTTCACTGGACAACGGTCTCCATCAGTCGAGAACATTTTTGGATTT
GTTACTCTGGGTTTGTGGTGTAGTCCTTTGTATCTTGTTTTGGTAGGATC
TTCTAAAAATTCTACATACTTTTCTCCACTTTCATCCGTTTTAAACAAGA
AATTATCCATCGACATAGTTGTGTGCTCTTGGCGGCCTCTCAATCCAAAA
TGCTGTGTGGTAAGAAACCAGACTGTATGGAGTAAAGCCTTAGGGTTGGT
TTTGCCTAACTTTCCAACGTTCCAAAGGATTTCCTCTTCTTTGTTAGTTA
AAGCACGGCTTGCGTTTGGTCTTCGACCTAGTCCATTTTCTCTGAGTGTT
CTTGCTTTTCCTTCGAGAATCTTGTTACATTTAGTGAACTCAATATCAGT
AATAATTGATTTTGGATAGTTCTTATCTTTCAAATATCGATATAAGCTGG
CCTGCATGACACGAAGGCTGTCAGGTTCATATTCTTTACCATCCTTTTTC
GTCAGTTCAGCGTAAAATTGAGACAGAACATCGTCCAATTCGTTTGCAGT
ATAATTTTTAAGGTCTGAtttcttgtttctttctttgGCCAATGATTGAT
AAGCATTTAACCAAGTCGATGTCGATCGTCTTGTATTCTTGCTCTCAGAT
TTCTCACTCAATTTCTGCAGCTCTTCTTCACTCAACAGTTTGAATCTGCC
CTTcgccattttattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00036268-exon-sc0001433-1491911889:10042..10849 | TCONS_00036268-exon-sc0001433-1491911889:10042..10849 | Clytia hemisphaerica | exon |
| TCONS_00036268-exon-sc0001433-1510915933:10042..10849 | TCONS_00036268-exon-sc0001433-1510915933:10042..10849 | Clytia hemisphaerica | exon |
| TCONS_00036268-exon-sc0001433-1575043694:10042..10849 | TCONS_00036268-exon-sc0001433-1575043694:10042..10849 | Clytia hemisphaerica | exon |
| TCONS_00036268-exon-sc0001433-1491911889:11221..11407 | TCONS_00036268-exon-sc0001433-1491911889:11221..11407 | Clytia hemisphaerica | exon |
| TCONS_00036268-exon-sc0001433-1510915933:11221..11407 | TCONS_00036268-exon-sc0001433-1510915933:11221..11407 | Clytia hemisphaerica | exon |
| TCONS_00036268-exon-sc0001433-1575043694:11221..11407 | TCONS_00036268-exon-sc0001433-1575043694:11221..11407 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001433 | supercontig | sc0001433:10042..11407 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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