TCONS_00036264 (transcript) - C. hemisphaerica

Overview
NameTCONS_00036264
Unique NameTCONS_00036264
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length808

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00036264 ID=TCONS_00036264|Name=TCONS_00036264|organism=Clytia hemisphaerica|type=transcript|length=808bp
ACGGtttatatgagtttttttaAATGGTGGATAGAGTAATTCGTTGAAAA
AAGTAAGGATGTGATTAATAAGTTATTGGAAAATATACAAATAATAATTA
GAATTCAACATCTGAAGAATAAATACAATTatatgatttgattttgacta
AATATAAATATGGATGTGTGgagaaaaaactgaatttttccATAAATATC
TGGTCAACCTAACCTTAAAacccaaaatttgaaattaaggCAGAGTACAA
GATAATGTTTAAAACATCATTAactgccaaatttaaaaatcatccAAACA
cgtaaaaatttaattattcAAACCATAAATATTAAGTGTGATAATGTATA
AGACTCAAAGATCGAGTTTAGTCATCAAATCTGAGACTATCtgattttca
atgttttctttatcggTTACAATAAATACTGATTTATCATTCTCCACTGA
CAGCTTACCAAGACCATTCAACTCTAACCCCTTTAGAAAACGTTTAGCTT
CTTCTGAACCATTTTTCCCACCTATTTGAGGACACATGTGATTTCTTGTG
ATGGATGAAACCGGTACGATCTTTGAATTTTGCGTGAAGATCTTTTTGAT
TTTCGCCTTGTGGACCAATAGAAACTCCTCATCCATTACTTCAGGTAAAG
GCATTTCGCTATGTCGTTTCCTTCCATTTCGTGAAGTATTTTTCGTGCTG
TCTATCAATGCAATTAAACAGTTAACCGAATACGTTACCAACGTGATGGC
TCGTTCCATGTCGACCATCCCAATTGTGAAATCCAGATTTGATAAGTCAT
CGGCATNN
Run BLAST on NCBI

protein sequence of TCONS_00036264-protein

>TCONS_00036264-protein ID=TCONS_00036264-protein|Name=TCONS_00036264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
XADDLSNLDFTIGMVDMERAITLVTYSVNCLIALIDSTKNTSRNGRKRHS
EMPLPEVMDEEFLLVHKAKIKKIFTQNSKIVPVSSITRNHMCPQIGGKNG
SEEAKRFLKGLELNGLGKLSVENDKSVFIVTDKENIENQIVSDLMTKLDL
Run BLAST on NCBI

transcript from alignment at sc0001432:8644..9451

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00036264 ID=TCONS_00036264|Name=TCONS_00036264|organism=Clytia hemisphaerica|type=transcript|length=808bp|location=Sequence derived from alignment at sc0001432:8644..9451 (Clytia hemisphaerica)
NNATGCCGATGACTTATCAAATCTGGATTTCACAATTGGGATGGTCGACA
TGGAACGAGCCATCACGTTGGTAACGTATTCGGTTAACTGTTTAATTGCA
TTGATAGACAGCACGAAAAATACTTCACGAAATGGAAGGAAACGACATAG
CGAAATGCCTTTACCTGAAGTAATGGATGAGGAGTTTCTATTGGTCCACA
AGGCGAAAATCAAAAAGATCTTCACGCAAAATTCAAAGATCGTACCGGTT
TCATCCATCACAAGAAATCACATGTGTCCTCAAATAGGTGGGAAAAATGG
TTCAGAAGAAGCTAAACGTTTTCTAAAGGGGTTAGAGTTGAATGGTCTTG
GTAAGCTGTCAGTGGAGAATGATAAATCAGTATTTATTGTAAccgataaa
gaaaacattgaaaatcaGATAGTCTCAGATTTGATGACTAAACTCGATCT
TTGAGTCTTATACATTATCACACTTAATATTTATGGTTTgaataattaaa
tttttacgTGTTTggatgatttttaaatttggcagtTAATGATGTTTTAA
ACATTATCTTGTACTCTGccttaatttcaaattttgggtTTTAAGGTTAG
GTTGACCAGATATTTATggaaaaattcagttttttctcCACACATCCATA
TTTATATTtagtcaaaatcaaatcatatAATTGTATTTATTCTTCAGATG
TTGAATTCTAATTATTATTTGTATATTTTCCAATAACTTATTAATCACAT
CCTTACTTTTTTCAACGAATTACTCTATCCACCATTtaaaaaaactcata
taaaCCGT

Coding sequence (CDS) from alignment at sc0001432:8644..9451

>TCONS_00036264 ID=TCONS_00036264|Name=TCONS_00036264|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0001432:8644..9451 (Clytia hemisphaerica)
NATGCCGATGACTTATCAAATCTGGATTTCACAATTGGGATGGTCGACAT
GGAACGAGCCATCACGTTGGTAACGTATTCGGTTAACTGTTTAATTGCAT
TGATAGACAGCACGAAAAATACTTCACGAAATGGAAGGAAACGACATAGC
GAAATGCCTTTACCTGAAGTAATGGATGAGGAGTTTCTATTGGTCCACAA
GGCGAAAATCAAAAAGATCTTCACGCAAAATTCAAAGATCGTACCGGTTT
CATCCATCACAAGAAATCACATGTGTCCTCAAATAGGTGGGAAAAATGGT
TCAGAAGAAGCTAAACGTTTTCTAAAGGGGTTAGAGTTGAATGGTCTTGG
TAAGCTGTCAGTGGAGAATGATAAATCAGTATTTATTGTAAccgataaag
aaaacattgaaaatcaGATAGTCTCAGATTTGATGACTAAACTCGATCTT
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_021328XLOC_021328Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036264-proteinTCONS_00036264-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00036264-exon-sc0001432-1491911889:8644..9451TCONS_00036264-exon-sc0001432-1491911889:8644..9451Clytia hemisphaericaexon
TCONS_00036264-exon-sc0001432-1510915933:8644..9451TCONS_00036264-exon-sc0001432-1510915933:8644..9451Clytia hemisphaericaexon
TCONS_00036264-exon-sc0001432-1575043694:8644..9451TCONS_00036264-exon-sc0001432-1575043694:8644..9451Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001432supercontigsc0001432:8644..9451 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0592283	0.115514	0.183114	0.262436	0.159745	0.0631164	0.0761473	0.248674	0.0998211	0.0618223	0	0.197229	0	0	0	0.110192	0.0444624	0.0455726	0	0.0658841	0.0907979	0	0.13582	0	15.9106	6.96324	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00036264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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